miRNA display CGI


Results 121 - 140 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 106757 0.66 0.579914
Target:  5'- -cGCCGCGGCGGggggggcgccguCUCCggcGCGAGgGCg- -3'
miRNA:   3'- cuCGGCGUCGCC------------GAGG---CGCUUgCGag -5'
6491 5' -61.5 NC_001847.1 + 106687 0.69 0.455712
Target:  5'- cAGCgGCGGCGGCccgUCGCGcGGCGC-Cg -3'
miRNA:   3'- cUCGgCGUCGCCGa--GGCGC-UUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 106666 0.69 0.429056
Target:  5'- -cGCCGCGGCG--UCCGCG-GCGCgUCg -3'
miRNA:   3'- cuCGGCGUCGCcgAGGCGCuUGCG-AG- -5'
6491 5' -61.5 NC_001847.1 + 106626 0.69 0.455712
Target:  5'- cGGGCgGCGGCGGCgcgCUGcCGGgccACGcCUCg -3'
miRNA:   3'- -CUCGgCGUCGCCGa--GGC-GCU---UGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 106518 0.72 0.277278
Target:  5'- cGGCCGCGggccccGCGGCcgCCGCGuAGCGCg- -3'
miRNA:   3'- cUCGGCGU------CGCCGa-GGCGC-UUGCGag -5'
6491 5' -61.5 NC_001847.1 + 106393 0.71 0.339746
Target:  5'- cAGCUGCAGguccgGGC-CCGCGAgcuucGCGCUCu -3'
miRNA:   3'- cUCGGCGUCg----CCGaGGCGCU-----UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 106309 0.73 0.258593
Target:  5'- cGGCgGCAGCGGCgCCGUc-ACGCUCc -3'
miRNA:   3'- cUCGgCGUCGCCGaGGCGcuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 106101 0.69 0.455712
Target:  5'- cGAGCacgGCGcGCaGCUCgGCGAGCGCg- -3'
miRNA:   3'- -CUCGg--CGU-CGcCGAGgCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 105954 0.68 0.511535
Target:  5'- gGAGCC-CGGCGGCgCCGgCG-GCGCg- -3'
miRNA:   3'- -CUCGGcGUCGCCGaGGC-GCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 105909 0.69 0.411804
Target:  5'- aGGCCGCGGcCGGCaggCCGCGGccCGC-Cg -3'
miRNA:   3'- cUCGGCGUC-GCCGa--GGCGCUu-GCGaG- -5'
6491 5' -61.5 NC_001847.1 + 105839 0.72 0.310785
Target:  5'- cGGGCCGCgccgAGCaGCUCgGCGGcccggagcacGCGCUCc -3'
miRNA:   3'- -CUCGGCG----UCGcCGAGgCGCU----------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 105800 0.71 0.332326
Target:  5'- gGGGCCGCGcGCuGGagCCGCGcGCGCUCc -3'
miRNA:   3'- -CUCGGCGU-CG-CCgaGGCGCuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 105682 0.73 0.252597
Target:  5'- cGGCCGCgGGCGGCgcuucggCCGCGGGCGg-- -3'
miRNA:   3'- cUCGGCG-UCGCCGa------GGCGCUUGCgag -5'
6491 5' -61.5 NC_001847.1 + 105623 0.68 0.464794
Target:  5'- -cGCCGCgcgGGCGaGCUCUGCGGccgaaGCGC-Cg -3'
miRNA:   3'- cuCGGCG---UCGC-CGAGGCGCU-----UGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 105596 0.7 0.386749
Target:  5'- --cCCGcCGGCGGCcuccagggCCGCGAGCGCg- -3'
miRNA:   3'- cucGGC-GUCGCCGa-------GGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 105187 0.71 0.354943
Target:  5'- cGGCgGCGGCGGCUuuUCGCcGGCGcCUCg -3'
miRNA:   3'- cUCGgCGUCGCCGA--GGCGcUUGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 105148 0.69 0.446726
Target:  5'- cGGGCaGCGGCGGCUCcCGCc-GCGC-Cg -3'
miRNA:   3'- -CUCGgCGUCGCCGAG-GCGcuUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 105100 0.67 0.521121
Target:  5'- -cGCCGuCGGCGGCggggCCGcCGGGCGg-- -3'
miRNA:   3'- cuCGGC-GUCGCCGa---GGC-GCUUGCgag -5'
6491 5' -61.5 NC_001847.1 + 105004 0.69 0.455712
Target:  5'- cGAGCCGCgccgcgaccucggGGCGGCaguaggccgccagcgCCGCG-GCGCUg -3'
miRNA:   3'- -CUCGGCG-------------UCGCCGa--------------GGCGCuUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 104931 0.68 0.492588
Target:  5'- cGGGCgCGC-GCGGCUUCGgCGcGCGCg- -3'
miRNA:   3'- -CUCG-GCGuCGCCGAGGC-GCuUGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.