miRNA display CGI


Results 141 - 160 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 104909 0.75 0.198779
Target:  5'- gGGGCCcgcGCGGCGGCgggCCGCGAucucggccaGCGcCUCg -3'
miRNA:   3'- -CUCGG---CGUCGCCGa--GGCGCU---------UGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 104885 0.66 0.639976
Target:  5'- -cGCCGCGGCGcGCUgcaacgccgCCaGCGAcACGCg- -3'
miRNA:   3'- cuCGGCGUCGC-CGA---------GG-CGCU-UGCGag -5'
6491 5' -61.5 NC_001847.1 + 104880 0.78 0.114484
Target:  5'- -cGCCGCAGCGGUggCgGCGAGCGCc- -3'
miRNA:   3'- cuCGGCGUCGCCGa-GgCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 104780 0.66 0.619901
Target:  5'- -cGCCG-GGCGGC-CCGCcAGCGcCUCc -3'
miRNA:   3'- cuCGGCgUCGCCGaGGCGcUUGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 104732 0.74 0.229753
Target:  5'- aGAGCCcgccgcggcGCGGCGGCcacucgggCCGCcGGCGCUCg -3'
miRNA:   3'- -CUCGG---------CGUCGCCGa-------GGCGcUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 104694 0.67 0.550277
Target:  5'- cAGCaGCAGcCGGUUgcccagcgCCGCGAGCGCg- -3'
miRNA:   3'- cUCGgCGUC-GCCGA--------GGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 104600 0.76 0.167301
Target:  5'- gGAGCCGCGcGaCGaGCUCgGCGAcgucGCGCUCg -3'
miRNA:   3'- -CUCGGCGU-C-GC-CGAGgCGCU----UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 104534 0.66 0.609873
Target:  5'- cGGCgcugCGCGGCGGCcCCGgGGcCGCUa -3'
miRNA:   3'- cUCG----GCGUCGCCGaGGCgCUuGCGAg -5'
6491 5' -61.5 NC_001847.1 + 104437 0.7 0.370613
Target:  5'- -cGCCGCGGCaGCaCCGCGGcGCGCa- -3'
miRNA:   3'- cuCGGCGUCGcCGaGGCGCU-UGCGag -5'
6491 5' -61.5 NC_001847.1 + 104343 0.73 0.251412
Target:  5'- -uGCCGCGGCGGCagacgcggcggcgUCCGCGcccgcagacgcgcGGCGCUg -3'
miRNA:   3'- cuCGGCGUCGCCG-------------AGGCGC-------------UUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 104297 0.74 0.229753
Target:  5'- aGAGCCGCAGCGGCggcgCCuCGGgguagagccGCGCg- -3'
miRNA:   3'- -CUCGGCGUCGCCGa---GGcGCU---------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 104067 0.7 0.390031
Target:  5'- cGGCCGCAGCGGCgcgccgagcCCccagcgguuggcggcGCGGugGCUg -3'
miRNA:   3'- cUCGGCGUCGCCGa--------GG---------------CGCUugCGAg -5'
6491 5' -61.5 NC_001847.1 + 104004 0.66 0.639976
Target:  5'- -cGCCGCGGcCGGCagcUCGuCGGGCGC-Ca -3'
miRNA:   3'- cuCGGCGUC-GCCGa--GGC-GCUUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 103916 0.7 0.394988
Target:  5'- cGGCCGCgGGCGGCgccgCCGCGG-C-CUCc -3'
miRNA:   3'- cUCGGCG-UCGCCGa---GGCGCUuGcGAG- -5'
6491 5' -61.5 NC_001847.1 + 103834 0.67 0.560109
Target:  5'- aGGCCGCcgcccGCGGCgcgCCGCagcagcacGAGCGuCUCc -3'
miRNA:   3'- cUCGGCGu----CGCCGa--GGCG--------CUUGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 103484 0.66 0.589873
Target:  5'- aGAGCCGCAcuCGGa-CCGCGugUGUUCg -3'
miRNA:   3'- -CUCGGCGUc-GCCgaGGCGCuuGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 103427 0.67 0.521121
Target:  5'- --uCCGCAGCGGCg-CGCGGcccGCGcCUCc -3'
miRNA:   3'- cucGGCGUCGCCGagGCGCU---UGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 103298 0.66 0.609873
Target:  5'- cAGCgGCGGCGGCggggcggCCGC--GCGC-Ca -3'
miRNA:   3'- cUCGgCGUCGCCGa------GGCGcuUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 103238 0.71 0.354172
Target:  5'- cGGCCGCggccgugaucugcGGCGGCaUCCGCGcGACggGCUCc -3'
miRNA:   3'- cUCGGCG-------------UCGCCG-AGGCGC-UUG--CGAG- -5'
6491 5' -61.5 NC_001847.1 + 103112 0.66 0.589873
Target:  5'- --uUCGCGGgGGCUUccccgCGCGAGCGCg- -3'
miRNA:   3'- cucGGCGUCgCCGAG-----GCGCUUGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.