Results 41 - 60 of 707 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 134038 | 0.78 | 0.111581 |
Target: 5'- aGGCCGCGGCGGCgccgcCCGCGGcCGCg- -3' miRNA: 3'- cUCGGCGUCGCCGa----GGCGCUuGCGag -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 133234 | 0.78 | 0.111581 |
Target: 5'- -cGCCGCGGCgGGCUCuCGCacGCGCUCg -3' miRNA: 3'- cuCGGCGUCG-CCGAG-GCGcuUGCGAG- -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 131830 | 0.79 | 0.095564 |
Target: 5'- cGGCgGCAGCGGCgcCCGCGccGCGCUCg -3' miRNA: 3'- cUCGgCGUCGCCGa-GGCGCu-UGCGAG- -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 86117 | 0.8 | 0.086121 |
Target: 5'- -cGCUGCacgAGCGGCUCCGCGAcgcgGCGCUg -3' miRNA: 3'- cuCGGCG---UCGCCGAGGCGCU----UGCGAg -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 53010 | 0.82 | 0.064528 |
Target: 5'- gGAGCCGaCAGCGGCggCCGCuGcGCGCUCg -3' miRNA: 3'- -CUCGGC-GUCGCCGa-GGCG-CuUGCGAG- -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 68790 | 0.76 | 0.171508 |
Target: 5'- -cGCCGCGGCGGC-CgCGCGAGCGggCc -3' miRNA: 3'- cuCGGCGUCGCCGaG-GCGCUUGCgaG- -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 6681 | 0.75 | 0.175809 |
Target: 5'- aGGCCGCGGCGGCcggCCGgGcGCGCg- -3' miRNA: 3'- cUCGGCGUCGCCGa--GGCgCuUGCGag -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 37583 | 0.74 | 0.202196 |
Target: 5'- uGGCCGCuGCGGCUgCgGCGGccgggggccggcccGCGCUCu -3' miRNA: 3'- cUCGGCGuCGCCGA-GgCGCU--------------UGCGAG- -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 104909 | 0.75 | 0.198779 |
Target: 5'- gGGGCCcgcGCGGCGGCgggCCGCGAucucggccaGCGcCUCg -3' miRNA: 3'- -CUCGG---CGUCGCCGa--GGCGCU---------UGC-GAG- -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 81441 | 0.75 | 0.198779 |
Target: 5'- cGAGCCGcCGGCGGCgcgCuCGCGcGCGCa- -3' miRNA: 3'- -CUCGGC-GUCGCCGa--G-GCGCuUGCGag -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 33630 | 0.75 | 0.198779 |
Target: 5'- cGGgCGCGGCGGCUgaCCGCGAgGCGCg- -3' miRNA: 3'- cUCgGCGUCGCCGA--GGCGCU-UGCGag -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 125212 | 0.75 | 0.198295 |
Target: 5'- cGGGCCGCGGCGaGCgugcucgUCCGCGGGgGCg- -3' miRNA: 3'- -CUCGGCGUCGC-CG-------AGGCGCUUgCGag -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 29520 | 0.75 | 0.193985 |
Target: 5'- cGGCCGCAGa-GCUCgcccgcgcggCGCGGGCGCUCg -3' miRNA: 3'- cUCGGCGUCgcCGAG----------GCGCUUGCGAG- -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 56623 | 0.75 | 0.189292 |
Target: 5'- aGGCCGCGGuCGaGCgcgucuaCCGCGAGCGCUa -3' miRNA: 3'- cUCGGCGUC-GC-CGa------GGCGCUUGCGAg -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 97098 | 0.75 | 0.1847 |
Target: 5'- uAGCCGCGGCGGCgcgguuggCCGCGAgaaacuGCGUg- -3' miRNA: 3'- cUCGGCGUCGCCGa-------GGCGCU------UGCGag -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 13476 | 0.75 | 0.180206 |
Target: 5'- cGGGCCGCaccccacagcGGCGGCcuUCCGCGAaguGCGCg- -3' miRNA: 3'- -CUCGGCG----------UCGCCG--AGGCGCU---UGCGag -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 90245 | 0.75 | 0.180206 |
Target: 5'- -cGCCGCcGCGGC-CUGUGAcGCGCUCg -3' miRNA: 3'- cuCGGCGuCGCCGaGGCGCU-UGCGAG- -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 62130 | 0.75 | 0.180206 |
Target: 5'- -uGCCGCGGCcuGGUUCCGCGcccGCGCUg -3' miRNA: 3'- cuCGGCGUCG--CCGAGGCGCu--UGCGAg -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 54377 | 0.75 | 0.180206 |
Target: 5'- cGAGCUGCuGCGGCgggcggCCGCGGGCGaggCg -3' miRNA: 3'- -CUCGGCGuCGCCGa-----GGCGCUUGCga-G- -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 27518 | 0.75 | 0.180206 |
Target: 5'- -cGCCGCGGCGGCggCGgGGACGCcCg -3' miRNA: 3'- cuCGGCGUCGCCGagGCgCUUGCGaG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home