miRNA display CGI


Results 61 - 80 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 90245 0.75 0.180206
Target:  5'- -cGCCGCcGCGGC-CUGUGAcGCGCUCg -3'
miRNA:   3'- cuCGGCGuCGCCGaGGCGCU-UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 13476 0.75 0.180206
Target:  5'- cGGGCCGCaccccacagcGGCGGCcuUCCGCGAaguGCGCg- -3'
miRNA:   3'- -CUCGGCG----------UCGCCG--AGGCGCU---UGCGag -5'
6491 5' -61.5 NC_001847.1 + 2448 0.74 0.213785
Target:  5'- cAGCCGCAGCGaGCUCCcgauCGAGCGggCg -3'
miRNA:   3'- cUCGGCGUCGC-CGAGGc---GCUUGCgaG- -5'
6491 5' -61.5 NC_001847.1 + 49913 0.74 0.213785
Target:  5'- cGGCCGCGGUGGCgCUGCGcguGCGCa- -3'
miRNA:   3'- cUCGGCGUCGCCGaGGCGCu--UGCGag -5'
6491 5' -61.5 NC_001847.1 + 73138 0.74 0.218999
Target:  5'- cGGCCGCAG-GGCcCCGCGc-CGCUCu -3'
miRNA:   3'- cUCGGCGUCgCCGaGGCGCuuGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 73707 0.74 0.218999
Target:  5'- -cGCCGCgcccGGCGGCgcggCCGCGGGCGUc- -3'
miRNA:   3'- cuCGGCG----UCGCCGa---GGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 54254 0.74 0.224321
Target:  5'- -cGCUGCGGUGGCgcCCGaCGAGCgGCUCg -3'
miRNA:   3'- cuCGGCGUCGCCGa-GGC-GCUUG-CGAG- -5'
6491 5' -61.5 NC_001847.1 + 104732 0.74 0.229753
Target:  5'- aGAGCCcgccgcggcGCGGCGGCcacucgggCCGCcGGCGCUCg -3'
miRNA:   3'- -CUCGG---------CGUCGCCGa-------GGCGcUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 16061 0.74 0.229753
Target:  5'- cGGCCGCGGCGcCUCUGCuGGGCGcCUCc -3'
miRNA:   3'- cUCGGCGUCGCcGAGGCG-CUUGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 104297 0.74 0.229753
Target:  5'- aGAGCCGCAGCGGCggcgCCuCGGgguagagccGCGCg- -3'
miRNA:   3'- -CUCGGCGUCGCCGa---GGcGCU---------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 29307 0.74 0.208678
Target:  5'- aGGCCGCGGCcGCggacaagcgagCCGCGAGCGCg- -3'
miRNA:   3'- cUCGGCGUCGcCGa----------GGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 91769 0.74 0.203676
Target:  5'- aAGaUCGCAGCGaGCUCCGCGAgguACGuCUCc -3'
miRNA:   3'- cUC-GGCGUCGC-CGAGGCGCU---UGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 97098 0.75 0.1847
Target:  5'- uAGCCGCGGCGGCgcgguuggCCGCGAgaaacuGCGUg- -3'
miRNA:   3'- cUCGGCGUCGCCGa-------GGCGCU------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 56623 0.75 0.189292
Target:  5'- aGGCCGCGGuCGaGCgcgucuaCCGCGAGCGCUa -3'
miRNA:   3'- cUCGGCGUC-GC-CGa------GGCGCUUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 29520 0.75 0.193985
Target:  5'- cGGCCGCAGa-GCUCgcccgcgcggCGCGGGCGCUCg -3'
miRNA:   3'- cUCGGCGUCgcCGAG----------GCGCUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 125212 0.75 0.198295
Target:  5'- cGGGCCGCGGCGaGCgugcucgUCCGCGGGgGCg- -3'
miRNA:   3'- -CUCGGCGUCGC-CG-------AGGCGCUUgCGag -5'
6491 5' -61.5 NC_001847.1 + 33630 0.75 0.198779
Target:  5'- cGGgCGCGGCGGCUgaCCGCGAgGCGCg- -3'
miRNA:   3'- cUCgGCGUCGCCGA--GGCGCU-UGCGag -5'
6491 5' -61.5 NC_001847.1 + 81441 0.75 0.198779
Target:  5'- cGAGCCGcCGGCGGCgcgCuCGCGcGCGCa- -3'
miRNA:   3'- -CUCGGC-GUCGCCGa--G-GCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 104909 0.75 0.198779
Target:  5'- gGGGCCcgcGCGGCGGCgggCCGCGAucucggccaGCGcCUCg -3'
miRNA:   3'- -CUCGG---CGUCGCCGa--GGCGCU---------UGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 37583 0.74 0.202196
Target:  5'- uGGCCGCuGCGGCUgCgGCGGccgggggccggcccGCGCUCu -3'
miRNA:   3'- cUCGGCGuCGCCGA-GgCGCU--------------UGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.