Results 101 - 120 of 707 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 31429 | 0.73 | 0.252597 |
Target: 5'- cAGCCGCGGCGGacgUCGCuGGCGCUg -3' miRNA: 3'- cUCGGCGUCGCCga-GGCGcUUGCGAg -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 28465 | 0.73 | 0.258593 |
Target: 5'- uGGCCGCcGUGGCacgacgcgCCGCGGACGC-Cg -3' miRNA: 3'- cUCGGCGuCGCCGa-------GGCGCUUGCGaG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 106309 | 0.73 | 0.258593 |
Target: 5'- cGGCgGCAGCGGCgCCGUc-ACGCUCc -3' miRNA: 3'- cUCGgCGUCGCCGaGGCGcuUGCGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 18780 | 0.73 | 0.258593 |
Target: 5'- cGGCCGaCAGCGcgaGCUCCGCGGcggcgGCGCg- -3' miRNA: 3'- cUCGGC-GUCGC---CGAGGCGCU-----UGCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 133057 | 0.73 | 0.258593 |
Target: 5'- -cGCCGC-GCgGGCcCCGCGgGGCGCUCg -3' miRNA: 3'- cuCGGCGuCG-CCGaGGCGC-UUGCGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 48771 | 0.73 | 0.240949 |
Target: 5'- -cGCCGCcGCGGCccgccgccucgUCUGCGGGCGcCUCg -3' miRNA: 3'- cuCGGCGuCGCCG-----------AGGCGCUUGC-GAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 88886 | 0.73 | 0.240949 |
Target: 5'- cGGCgGCGGCGGCUcCCGCcggGGGCgGCUCc -3' miRNA: 3'- cUCGgCGUCGCCGA-GGCG---CUUG-CGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 2448 | 0.74 | 0.213785 |
Target: 5'- cAGCCGCAGCGaGCUCCcgauCGAGCGggCg -3' miRNA: 3'- cUCGGCGUCGC-CGAGGc---GCUUGCgaG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 49913 | 0.74 | 0.213785 |
Target: 5'- cGGCCGCGGUGGCgCUGCGcguGCGCa- -3' miRNA: 3'- cUCGGCGUCGCCGaGGCGCu--UGCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 73138 | 0.74 | 0.218999 |
Target: 5'- cGGCCGCAG-GGCcCCGCGc-CGCUCu -3' miRNA: 3'- cUCGGCGUCgCCGaGGCGCuuGCGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 73707 | 0.74 | 0.218999 |
Target: 5'- -cGCCGCgcccGGCGGCgcggCCGCGGGCGUc- -3' miRNA: 3'- cuCGGCG----UCGCCGa---GGCGCUUGCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 54254 | 0.74 | 0.224321 |
Target: 5'- -cGCUGCGGUGGCgcCCGaCGAGCgGCUCg -3' miRNA: 3'- cuCGGCGUCGCCGa-GGC-GCUUG-CGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 104732 | 0.74 | 0.229753 |
Target: 5'- aGAGCCcgccgcggcGCGGCGGCcacucgggCCGCcGGCGCUCg -3' miRNA: 3'- -CUCGG---------CGUCGCCGa-------GGCGcUUGCGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 16061 | 0.74 | 0.229753 |
Target: 5'- cGGCCGCGGCGcCUCUGCuGGGCGcCUCc -3' miRNA: 3'- cUCGGCGUCGCcGAGGCG-CUUGC-GAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 104297 | 0.74 | 0.229753 |
Target: 5'- aGAGCCGCAGCGGCggcgCCuCGGgguagagccGCGCg- -3' miRNA: 3'- -CUCGGCGUCGCCGa---GGcGCU---------UGCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 15030 | 0.74 | 0.229753 |
Target: 5'- cGAGCCGCggccgccgGGCGaGCUgUGCGAGCGC-Ca -3' miRNA: 3'- -CUCGGCG--------UCGC-CGAgGCGCUUGCGaG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 33124 | 0.74 | 0.229753 |
Target: 5'- cGA-CCGCGGCGGCg--GCGAGCGCUUc -3' miRNA: 3'- -CUcGGCGUCGCCGaggCGCUUGCGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 88807 | 0.73 | 0.235295 |
Target: 5'- -uGCCGCcgacGCGGC-CCGCGGgcggccgugcuGCGCUCg -3' miRNA: 3'- cuCGGCGu---CGCCGaGGCGCU-----------UGCGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 34272 | 0.73 | 0.235295 |
Target: 5'- cGGCgCGCGGCGGCUggGCGccGCGCUCg -3' miRNA: 3'- cUCG-GCGUCGCCGAggCGCu-UGCGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 108031 | 0.73 | 0.235295 |
Target: 5'- -cGCCGCGGCGGC-CgGCGGggcGCGCg- -3' miRNA: 3'- cuCGGCGUCGCCGaGgCGCU---UGCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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