miRNA display CGI


Results 161 - 180 of 707 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 28465 0.73 0.258593
Target:  5'- uGGCCGCcGUGGCacgacgcgCCGCGGACGC-Cg -3'
miRNA:   3'- cUCGGCGuCGCCGa-------GGCGCUUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 31429 0.73 0.252597
Target:  5'- cAGCCGCGGCGGacgUCGCuGGCGCUg -3'
miRNA:   3'- cUCGGCGUCGCCga-GGCGcUUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 59515 0.73 0.252597
Target:  5'- aGGCCGCAcCGGCUUgGUGcgcuGCGCUCa -3'
miRNA:   3'- cUCGGCGUcGCCGAGgCGCu---UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 43124 0.73 0.252597
Target:  5'- -uGcCCGCAGaCGGCgcgggcCCGCGGGCGCUg -3'
miRNA:   3'- cuC-GGCGUC-GCCGa-----GGCGCUUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 38580 0.73 0.252597
Target:  5'- gGAGCCGCGGaGGCUCCugGCguuGAGCGCg- -3'
miRNA:   3'- -CUCGGCGUCgCCGAGG--CG---CUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 55340 0.73 0.250231
Target:  5'- uGGCCGCucGCGGCggugcugaacgcgCCGCGGGCGC-Cg -3'
miRNA:   3'- cUCGGCGu-CGCCGa------------GGCGCUUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 6963 0.73 0.246716
Target:  5'- gGGGUCGCGGCGGCgcuuccgcCCGCGGGcCGCcCa -3'
miRNA:   3'- -CUCGGCGUCGCCGa-------GGCGCUU-GCGaG- -5'
6491 5' -61.5 NC_001847.1 + 3898 0.73 0.246716
Target:  5'- cGAGCCGUugcgcGCGGUggCGCGGACGCa- -3'
miRNA:   3'- -CUCGGCGu----CGCCGagGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 133966 0.73 0.240949
Target:  5'- cGGCCGCGGCGGUggccuUCUGCGcggccGCGCUg -3'
miRNA:   3'- cUCGGCGUCGCCG-----AGGCGCu----UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 106309 0.73 0.258593
Target:  5'- cGGCgGCAGCGGCgCCGUc-ACGCUCc -3'
miRNA:   3'- cUCGgCGUCGCCGaGGCGcuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 133670 0.73 0.240949
Target:  5'- -cGCCGCuGCGGCUcugCCGCGGcggcaacguGCGCUa -3'
miRNA:   3'- cuCGGCGuCGCCGA---GGCGCU---------UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 65750 0.72 0.277278
Target:  5'- aGAG-CGUGGUGGC-CCGCGGGCGCa- -3'
miRNA:   3'- -CUCgGCGUCGCCGaGGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 2357 0.72 0.276638
Target:  5'- cGGGCCGCAugagguccagucGCGcGC-CCGCGAagacggcggugacGCGCUCg -3'
miRNA:   3'- -CUCGGCGU------------CGC-CGaGGCGCU-------------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 123731 0.73 0.270933
Target:  5'- cAGCgGCGGCGGCaUCgGCGGcGCGCUg -3'
miRNA:   3'- cUCGgCGUCGCCG-AGgCGCU-UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 14457 0.73 0.270933
Target:  5'- cGGCCGC-GCuGCUCgGCGuGCGCUCc -3'
miRNA:   3'- cUCGGCGuCGcCGAGgCGCuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 65110 0.73 0.269052
Target:  5'- cGAGCCGCGGCucggcuggcgguggGGCUCgGCuuccuGAGCGuCUCg -3'
miRNA:   3'- -CUCGGCGUCG--------------CCGAGgCG-----CUUGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 94823 0.73 0.264705
Target:  5'- aGGGCCGCAGCcGCUuuGUGGucuuuACGCUa -3'
miRNA:   3'- -CUCGGCGUCGcCGAggCGCU-----UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 49041 0.73 0.262246
Target:  5'- cGAGCCGUGGUGGCgcgcagcucacggCCGCGGGCGg-- -3'
miRNA:   3'- -CUCGGCGUCGCCGa------------GGCGCUUGCgag -5'
6491 5' -61.5 NC_001847.1 + 133057 0.73 0.258593
Target:  5'- -cGCCGC-GCgGGCcCCGCGgGGCGCUCg -3'
miRNA:   3'- cuCGGCGuCG-CCGaGGCGC-UUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 18780 0.73 0.258593
Target:  5'- cGGCCGaCAGCGcgaGCUCCGCGGcggcgGCGCg- -3'
miRNA:   3'- cUCGGC-GUCGC---CGAGGCGCU-----UGCGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.