miRNA display CGI


Results 81 - 100 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 125598 0.66 0.599862
Target:  5'- cGGCUGCAGCgcuGGCgcaCGCacGGACGCUa -3'
miRNA:   3'- cUCGGCGUCG---CCGag-GCG--CUUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 110906 0.66 0.589873
Target:  5'- -cGCCGCgcGGCGGCUgaacguggagaUCGCcGAGCGCc- -3'
miRNA:   3'- cuCGGCG--UCGCCGA-----------GGCG-CUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 53270 0.66 0.589873
Target:  5'- cGA-CCGC-GCGGCcgagUCCGaCGAacgcGCGCUCg -3'
miRNA:   3'- -CUcGGCGuCGCCG----AGGC-GCU----UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 31269 0.66 0.589873
Target:  5'- uGGGaCGCGGaccagGGC-CCGCGGgagACGCUCg -3'
miRNA:   3'- -CUCgGCGUCg----CCGaGGCGCU---UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 74146 0.66 0.579914
Target:  5'- -cGCCGaUGGCGGCcucgacggcgCCGUGGGCGCg- -3'
miRNA:   3'- cuCGGC-GUCGCCGa---------GGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 69383 0.67 0.56999
Target:  5'- cGGCgCGCAGCuugcGC-CCGCGGgccaccACGCUCu -3'
miRNA:   3'- cUCG-GCGUCGc---CGaGGCGCU------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 101490 0.67 0.560109
Target:  5'- cGGGCCGCGGCcacGCg-CGCGcGCGcCUCg -3'
miRNA:   3'- -CUCGGCGUCGc--CGagGCGCuUGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 67067 0.66 0.613883
Target:  5'- -cGCCGCGGCguucgccccgccgcaGGCgcgCCGCGAGgcCGC-Cg -3'
miRNA:   3'- cuCGGCGUCG---------------CCGa--GGCGCUU--GCGaG- -5'
6491 5' -61.5 NC_001847.1 + 61298 0.66 0.618898
Target:  5'- --aCCGCGGCGGCguuuuuaUgCGCGggUGCg- -3'
miRNA:   3'- cucGGCGUCGCCG-------AgGCGCuuGCGag -5'
6491 5' -61.5 NC_001847.1 + 33064 0.66 0.619901
Target:  5'- cGGGUCGCGcGCGGC-CCGCGccUGCc- -3'
miRNA:   3'- -CUCGGCGU-CGCCGaGGCGCuuGCGag -5'
6491 5' -61.5 NC_001847.1 + 46344 0.67 0.550277
Target:  5'- gGGGCCGCgucGGCGGCaUCG-GGGgGCUCc -3'
miRNA:   3'- -CUCGGCG---UCGCCGaGGCgCUUgCGAG- -5'
6491 5' -61.5 NC_001847.1 + 74655 0.67 0.547337
Target:  5'- cGGCCcgcgcgcgcacaaaGCGGCGGCgCCaugGCGGACGCg- -3'
miRNA:   3'- cUCGG--------------CGUCGCCGaGG---CGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 89635 0.67 0.540497
Target:  5'- -cGCCGCccGGCGGCggcgcCCGCcccGGGCGUUUg -3'
miRNA:   3'- cuCGGCG--UCGCCGa----GGCG---CUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 35958 0.67 0.540497
Target:  5'- -cGCUGCuGGCGGCgCUGCuGugGCUCc -3'
miRNA:   3'- cuCGGCG-UCGCCGaGGCGcUugCGAG- -5'
6491 5' -61.5 NC_001847.1 + 99210 0.67 0.530777
Target:  5'- cGGCCGCgcGGCGGCgcgCCGCcacaaagaGCUCc -3'
miRNA:   3'- cUCGGCG--UCGCCGa--GGCGcuug----CGAG- -5'
6491 5' -61.5 NC_001847.1 + 58457 0.66 0.639976
Target:  5'- cAGCCGCAGCG---CCGCGcGCGUg- -3'
miRNA:   3'- cUCGGCGUCGCcgaGGCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 80152 0.66 0.639976
Target:  5'- -cGCgGUguuuGGCGGCUgCGCGAaguugugcGCGCUg -3'
miRNA:   3'- cuCGgCG----UCGCCGAgGCGCU--------UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 33180 0.66 0.629938
Target:  5'- -uGCCGUGaCGGC-CCGCGA--GCUCg -3'
miRNA:   3'- cuCGGCGUcGCCGaGGCGCUugCGAG- -5'
6491 5' -61.5 NC_001847.1 + 34080 0.66 0.628934
Target:  5'- --cCCGCGGCGGCcccggggccggccUCgGCGggUGCg- -3'
miRNA:   3'- cucGGCGUCGCCG-------------AGgCGCuuGCGag -5'
6491 5' -61.5 NC_001847.1 + 85069 0.66 0.619901
Target:  5'- uGGCCGCGccCGGgUCCGCGccGCGCg- -3'
miRNA:   3'- cUCGGCGUc-GCCgAGGCGCu-UGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.