Results 101 - 120 of 707 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 43673 | 0.67 | 0.540497 |
Target: 5'- -cGCCGCAG-GuGCUCgacgaccucgUGUGGACGCUCc -3' miRNA: 3'- cuCGGCGUCgC-CGAG----------GCGCUUGCGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 95968 | 0.67 | 0.530777 |
Target: 5'- uGAGCgcaGCAGCcGCUgCCGCGGcuGCGCg- -3' miRNA: 3'- -CUCGg--CGUCGcCGA-GGCGCU--UGCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 66989 | 0.67 | 0.527874 |
Target: 5'- cGGGCUGCGgcGCGGCgCCG-GAgaaggggcagacgcGCGCUCg -3' miRNA: 3'- -CUCGGCGU--CGCCGaGGCgCU--------------UGCGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 75276 | 0.67 | 0.521121 |
Target: 5'- aGGCCGCGcgcGCGGCccUCgGCGAcCGCg- -3' miRNA: 3'- cUCGGCGU---CGCCG--AGgCGCUuGCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 102223 | 0.67 | 0.521121 |
Target: 5'- cGGGUCGUcgGGCGGgaCgGCGuccaGGCGCUCg -3' miRNA: 3'- -CUCGGCG--UCGCCgaGgCGC----UUGCGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 31269 | 0.66 | 0.589873 |
Target: 5'- uGGGaCGCGGaccagGGC-CCGCGGgagACGCUCg -3' miRNA: 3'- -CUCgGCGUCg----CCGaGGCGCU---UGCGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 53270 | 0.66 | 0.589873 |
Target: 5'- cGA-CCGC-GCGGCcgagUCCGaCGAacgcGCGCUCg -3' miRNA: 3'- -CUcGGCGuCGCCG----AGGC-GCU----UGCGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 58457 | 0.66 | 0.639976 |
Target: 5'- cAGCCGCAGCG---CCGCGcGCGUg- -3' miRNA: 3'- cUCGGCGUCGCcgaGGCGCuUGCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 80152 | 0.66 | 0.639976 |
Target: 5'- -cGCgGUguuuGGCGGCUgCGCGAaguugugcGCGCUg -3' miRNA: 3'- cuCGgCG----UCGCCGAgGCGCU--------UGCGAg -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 33180 | 0.66 | 0.629938 |
Target: 5'- -uGCCGUGaCGGC-CCGCGA--GCUCg -3' miRNA: 3'- cuCGGCGUcGCCGaGGCGCUugCGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 34080 | 0.66 | 0.628934 |
Target: 5'- --cCCGCGGCGGCcccggggccggccUCgGCGggUGCg- -3' miRNA: 3'- cucGGCGUCGCCG-------------AGgCGCuuGCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 85069 | 0.66 | 0.619901 |
Target: 5'- uGGCCGCGccCGGgUCCGCGccGCGCg- -3' miRNA: 3'- cUCGGCGUc-GCCgAGGCGCu-UGCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 33064 | 0.66 | 0.619901 |
Target: 5'- cGGGUCGCGcGCGGC-CCGCGccUGCc- -3' miRNA: 3'- -CUCGGCGU-CGCCGaGGCGCuuGCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 61298 | 0.66 | 0.618898 |
Target: 5'- --aCCGCGGCGGCguuuuuaUgCGCGggUGCg- -3' miRNA: 3'- cucGGCGUCGCCG-------AgGCGCuuGCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 67067 | 0.66 | 0.613883 |
Target: 5'- -cGCCGCGGCguucgccccgccgcaGGCgcgCCGCGAGgcCGC-Cg -3' miRNA: 3'- cuCGGCGUCG---------------CCGa--GGCGCUU--GCGaG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 97187 | 0.66 | 0.609873 |
Target: 5'- -cGCUGCguAGCGGCUugcUCGCGAucaGCGC-Cg -3' miRNA: 3'- cuCGGCG--UCGCCGA---GGCGCU---UGCGaG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 485 | 0.66 | 0.609873 |
Target: 5'- cAGCgGCGGCGGCggggcggCCGC--GCGC-Ca -3' miRNA: 3'- cUCGgCGUCGCCGa------GGCGcuUGCGaG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 70099 | 0.66 | 0.599862 |
Target: 5'- cGGGCCaCAccGCGGCaaaaUCCGCcacguGGCGCUCg -3' miRNA: 3'- -CUCGGcGU--CGCCG----AGGCGc----UUGCGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 125598 | 0.66 | 0.599862 |
Target: 5'- cGGCUGCAGCgcuGGCgcaCGCacGGACGCUa -3' miRNA: 3'- cUCGGCGUCG---CCGag-GCG--CUUGCGAg -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 110906 | 0.66 | 0.589873 |
Target: 5'- -cGCCGCgcGGCGGCUgaacguggagaUCGCcGAGCGCc- -3' miRNA: 3'- cuCGGCG--UCGCCGA-----------GGCG-CUUGCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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