miRNA display CGI


Results 121 - 140 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 49400 0.66 0.619901
Target:  5'- -uGCCGUcauGGCgGGCUCCGCGcAGC-CUg -3'
miRNA:   3'- cuCGGCG---UCG-CCGAGGCGC-UUGcGAg -5'
6491 5' -61.5 NC_001847.1 + 11654 0.66 0.619901
Target:  5'- gGAGCCuuccgGCGGCGGUgaaGgGGGCGCUg -3'
miRNA:   3'- -CUCGG-----CGUCGCCGaggCgCUUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 101058 0.67 0.521121
Target:  5'- cGAGCCaCGGCGGCcgccacgcgcUCCGCGugccccucgaaaAACGCg- -3'
miRNA:   3'- -CUCGGcGUCGCCG----------AGGCGC------------UUGCGag -5'
6491 5' -61.5 NC_001847.1 + 71723 0.67 0.530777
Target:  5'- cGGCC-CGcCGGCgCCGCGuGCGCUCc -3'
miRNA:   3'- cUCGGcGUcGCCGaGGCGCuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 82633 0.67 0.530777
Target:  5'- cGGGCCGCGcggccGCGcGCUCCGUca--GCUCc -3'
miRNA:   3'- -CUCGGCGU-----CGC-CGAGGCGcuugCGAG- -5'
6491 5' -61.5 NC_001847.1 + 33844 0.66 0.609873
Target:  5'- gGAGUCGCGGCGGgagagaCCGCGGGCu--- -3'
miRNA:   3'- -CUCGGCGUCGCCga----GGCGCUUGcgag -5'
6491 5' -61.5 NC_001847.1 + 99642 0.66 0.599862
Target:  5'- cGGCgCGCGccGUGGcCUCCGCGcGCGC-Cg -3'
miRNA:   3'- cUCG-GCGU--CGCC-GAGGCGCuUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 69423 0.66 0.599862
Target:  5'- -cGCCGCcccGGCgGGCUCUGggaUGAACGCg- -3'
miRNA:   3'- cuCGGCG---UCG-CCGAGGC---GCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 30711 0.66 0.589873
Target:  5'- -cGCCGCGGU-GCUgCCGCG-GCGCa- -3'
miRNA:   3'- cuCGGCGUCGcCGA-GGCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 58006 0.66 0.589873
Target:  5'- -cGCagGCGGCGGCggUCGCGcGCGCg- -3'
miRNA:   3'- cuCGg-CGUCGCCGa-GGCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 38073 0.66 0.589873
Target:  5'- -uGCgCGCGGCGGCcgCCGCGGuCGg-- -3'
miRNA:   3'- cuCG-GCGUCGCCGa-GGCGCUuGCgag -5'
6491 5' -61.5 NC_001847.1 + 72774 0.66 0.588876
Target:  5'- cGGGCgGC-GCGGCgugCCuggGCGAaauuucgGCGCUCu -3'
miRNA:   3'- -CUCGgCGuCGCCGa--GG---CGCU-------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 121095 0.66 0.57892
Target:  5'- cGGCCGCgaaccuAGCGGCUC-GCGGccgaccaGCGcCUCu -3'
miRNA:   3'- cUCGGCG------UCGCCGAGgCGCU-------UGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 69383 0.67 0.56999
Target:  5'- cGGCgCGCAGCuugcGC-CCGCGGgccaccACGCUCu -3'
miRNA:   3'- cUCG-GCGUCGc---CGaGGCGCU------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 100688 0.67 0.560109
Target:  5'- -cGCCGcCGGCGGCcaCCGCG-GC-CUCg -3'
miRNA:   3'- cuCGGC-GUCGCCGa-GGCGCuUGcGAG- -5'
6491 5' -61.5 NC_001847.1 + 78315 0.67 0.560109
Target:  5'- -cGgCGCGGCGcGCgcgCCGCGGGCccgGCUUg -3'
miRNA:   3'- cuCgGCGUCGC-CGa--GGCGCUUG---CGAG- -5'
6491 5' -61.5 NC_001847.1 + 80936 0.67 0.550277
Target:  5'- -cGCCGUccAGCuGCgccagcuugUCCGCGAGCGCg- -3'
miRNA:   3'- cuCGGCG--UCGcCG---------AGGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 26514 0.67 0.550277
Target:  5'- -uGCCGgGcGCGGggCCGgGGGCGUUCg -3'
miRNA:   3'- cuCGGCgU-CGCCgaGGCgCUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 117891 0.67 0.540497
Target:  5'- --uCCGCAaCGGCUaccCCGUGGAgGCUCg -3'
miRNA:   3'- cucGGCGUcGCCGA---GGCGCUUgCGAG- -5'
6491 5' -61.5 NC_001847.1 + 47414 0.67 0.540497
Target:  5'- aGGCCGUgGGCGGCgUCUGCG-ACGUcgUCg -3'
miRNA:   3'- cUCGGCG-UCGCCG-AGGCGCuUGCG--AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.