miRNA display CGI


Results 141 - 160 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 19456 0.68 0.47397
Target:  5'- -uGCCGggcCAGCcGCUCCGCcGcGCGCUCc -3'
miRNA:   3'- cuCGGC---GUCGcCGAGGCG-CuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 55155 0.68 0.47397
Target:  5'- aGAGCCcccCAGCGGCcagaCGCGGggcGCGCUg -3'
miRNA:   3'- -CUCGGc--GUCGCCGag--GCGCU---UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 82759 0.67 0.521121
Target:  5'- -cGCCGUAGaCGGCcgUCUGCGccAGCGCg- -3'
miRNA:   3'- cuCGGCGUC-GCCG--AGGCGC--UUGCGag -5'
6491 5' -61.5 NC_001847.1 + 66989 0.67 0.527874
Target:  5'- cGGGCUGCGgcGCGGCgCCG-GAgaaggggcagacgcGCGCUCg -3'
miRNA:   3'- -CUCGGCGU--CGCCGaGGCgCU--------------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 35958 0.67 0.540497
Target:  5'- -cGCUGCuGGCGGCgCUGCuGugGCUCc -3'
miRNA:   3'- cuCGGCG-UCGCCGaGGCGcUugCGAG- -5'
6491 5' -61.5 NC_001847.1 + 47414 0.67 0.540497
Target:  5'- aGGCCGUgGGCGGCgUCUGCG-ACGUcgUCg -3'
miRNA:   3'- cUCGGCG-UCGCCG-AGGCGCuUGCG--AG- -5'
6491 5' -61.5 NC_001847.1 + 74655 0.67 0.547337
Target:  5'- cGGCCcgcgcgcgcacaaaGCGGCGGCgCCaugGCGGACGCg- -3'
miRNA:   3'- cUCGG--------------CGUCGCCGaGG---CGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 26514 0.67 0.550277
Target:  5'- -uGCCGgGcGCGGggCCGgGGGCGUUCg -3'
miRNA:   3'- cuCGGCgU-CGCCgaGGCgCUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 132968 0.67 0.550277
Target:  5'- -cGCCGCccaGGCggCGCGGGCGCUg -3'
miRNA:   3'- cuCGGCGucgCCGagGCGCUUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 15248 0.67 0.560109
Target:  5'- cGGCgGCGGCGGCcacgCaCGCGAuCGC-Cg -3'
miRNA:   3'- cUCGgCGUCGCCGa---G-GCGCUuGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 102223 0.67 0.521121
Target:  5'- cGGGUCGUcgGGCGGgaCgGCGuccaGGCGCUCg -3'
miRNA:   3'- -CUCGGCG--UCGCCgaGgCGC----UUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 2287 0.67 0.521121
Target:  5'- -cGCCGuCGGCGGCggggCCGcCGGGCGg-- -3'
miRNA:   3'- cuCGGC-GUCGCCGa---GGC-GCUUGCgag -5'
6491 5' -61.5 NC_001847.1 + 129942 0.68 0.47397
Target:  5'- -cGUCGCGGCGcGCUugCCGCGcucgcGGCGCUg -3'
miRNA:   3'- cuCGGCGUCGC-CGA--GGCGC-----UUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 130601 0.68 0.47397
Target:  5'- -cGCCGCgccacccgcgGGCGGCcgCCGCGAggcacgucguGCGCa- -3'
miRNA:   3'- cuCGGCG----------UCGCCGa-GGCGCU----------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 74307 0.68 0.483236
Target:  5'- -cGCCGC-GCaGCgCCGCGGGCGCc- -3'
miRNA:   3'- cuCGGCGuCGcCGaGGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 66213 0.68 0.492588
Target:  5'- -cGCCcaGCGGCGGCUCgGgCGcGCGCa- -3'
miRNA:   3'- cuCGG--CGUCGCCGAGgC-GCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 36987 0.68 0.502022
Target:  5'- -cGCCGCGGCGuGCUgCUGCuuaacaccuCGCUCa -3'
miRNA:   3'- cuCGGCGUCGC-CGA-GGCGcuu------GCGAG- -5'
6491 5' -61.5 NC_001847.1 + 53712 0.68 0.502022
Target:  5'- -cGCCGcCGGCGGCUC-GCGGggcggaucgGCGCg- -3'
miRNA:   3'- cuCGGC-GUCGCCGAGgCGCU---------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 67197 0.68 0.511535
Target:  5'- -uGCCGCGGCugugugccgucGuGCUgCGCGGACGCcgUCg -3'
miRNA:   3'- cuCGGCGUCG-----------C-CGAgGCGCUUGCG--AG- -5'
6491 5' -61.5 NC_001847.1 + 71005 0.68 0.511535
Target:  5'- cGGGCCGCAuguccaguaCGGCggCCGCGcACGCg- -3'
miRNA:   3'- -CUCGGCGUc--------GCCGa-GGCGCuUGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.