Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6492 | 3' | -52.8 | NC_001847.1 | + | 81939 | 0.67 | 0.952772 |
Target: 5'- aGCUUGACgGCGUcgaggUGGCGgcgcgccacagccgGGUCgCAGc -3' miRNA: 3'- -CGAACUGgUGCA-----ACCGCa-------------CCAG-GUUc -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 83399 | 0.66 | 0.962678 |
Target: 5'- ---aGACCGCGUUGG-G-GGUCUuuGAGa -3' miRNA: 3'- cgaaCUGGUGCAACCgCaCCAGG--UUC- -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 84132 | 0.71 | 0.826887 |
Target: 5'- aGC---GCCGCGaaagcUGGCGUGGUCCGu- -3' miRNA: 3'- -CGaacUGGUGCa----ACCGCACCAGGUuc -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 97094 | 0.66 | 0.966071 |
Target: 5'- aGCUUaGCCGCGgcGGCGcGGUUggccgCGAGa -3' miRNA: 3'- -CGAAcUGGUGCaaCCGCaCCAG-----GUUC- -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 97301 | 0.7 | 0.835466 |
Target: 5'- ---gGACCGCGggGcGCGUGccuccGUCCGAGg -3' miRNA: 3'- cgaaCUGGUGCaaC-CGCAC-----CAGGUUC- -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 102146 | 0.68 | 0.921341 |
Target: 5'- cGCgcGACCACGgcGGCGcGGcCCGc- -3' miRNA: 3'- -CGaaCUGGUGCaaCCGCaCCaGGUuc -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 111050 | 0.74 | 0.639095 |
Target: 5'- ---cGGCUACGagGGCGUGGUCCu-- -3' miRNA: 3'- cgaaCUGGUGCaaCCGCACCAGGuuc -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 113616 | 0.68 | 0.932265 |
Target: 5'- aGCUUGGgCGCGUUGGCccgcgcGGcccccgCCGAGg -3' miRNA: 3'- -CGAACUgGUGCAACCGca----CCa-----GGUUC- -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 116713 | 0.66 | 0.962678 |
Target: 5'- gGC-UGGCCGCGgcGcaCGUGG-CCAAGg -3' miRNA: 3'- -CGaACUGGUGCaaCc-GCACCaGGUUC- -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 125228 | 0.71 | 0.800063 |
Target: 5'- uGCUcGuCCGCGggGGCGgGGcCCGAGa -3' miRNA: 3'- -CGAaCuGGUGCaaCCGCaCCaGGUUC- -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 125432 | 0.71 | 0.818121 |
Target: 5'- aGCgagUGGCCGCGcagGGCGc-GUCCGGGg -3' miRNA: 3'- -CGa--ACUGGUGCaa-CCGCacCAGGUUC- -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 131158 | 0.66 | 0.972192 |
Target: 5'- aCUUGGCCGCGcUGGCGcugcucacGGcCCAc- -3' miRNA: 3'- cGAACUGGUGCaACCGCa-------CCaGGUuc -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 132462 | 0.66 | 0.966071 |
Target: 5'- cGCgggcgGACC-CGgaGGaCG-GGUCCGAGg -3' miRNA: 3'- -CGaa---CUGGuGCaaCC-GCaCCAGGUUC- -5' |
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6492 | 3' | -52.8 | NC_001847.1 | + | 134059 | 0.66 | 0.962678 |
Target: 5'- ---cGGCCGCGgcgcccGGCGUGGaCUggGa -3' miRNA: 3'- cgaaCUGGUGCaa----CCGCACCaGGuuC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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