miRNA display CGI


Results 61 - 80 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 31426 0.66 0.813726
Target:  5'- cGGCG-GGCggCGGCCGGCGgccGcGGCg -3'
miRNA:   3'- -UCGUaUCGgaGCCGGUCGCau-CuCCG- -5'
6492 5' -57.4 NC_001847.1 + 83121 0.66 0.82242
Target:  5'- cGCGUAGCaccucCUCGGCggccgccgCGGCGUcGGGcGCg -3'
miRNA:   3'- uCGUAUCG-----GAGCCG--------GUCGCAuCUC-CG- -5'
6492 5' -57.4 NC_001847.1 + 58191 0.66 0.82242
Target:  5'- aAGCc--GCCuUCGGCCAGCaGgcGcuccGGGCg -3'
miRNA:   3'- -UCGuauCGG-AGCCGGUCG-CauC----UCCG- -5'
6492 5' -57.4 NC_001847.1 + 37965 0.66 0.82242
Target:  5'- uAGcCAUGGCCcgcgugCGcGCCGGCaGUgucuuuggGGAGGCc -3'
miRNA:   3'- -UC-GUAUCGGa-----GC-CGGUCG-CA--------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 32669 0.66 0.813726
Target:  5'- uGCcUGGCCugcaUCcGCCGGUGgcuggAGGGGCg -3'
miRNA:   3'- uCGuAUCGG----AGcCGGUCGCa----UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 58583 0.66 0.813726
Target:  5'- gGGCcgGGCCgcCGGCU-GCGU--GGGCa -3'
miRNA:   3'- -UCGuaUCGGa-GCCGGuCGCAucUCCG- -5'
6492 5' -57.4 NC_001847.1 + 13319 0.66 0.82242
Target:  5'- aGGCAgacgGGCUcCGGCacgGGCGgcgAGcAGGCg -3'
miRNA:   3'- -UCGUa---UCGGaGCCGg--UCGCa--UC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 2277 0.66 0.82242
Target:  5'- cGGCGgaAGCCgccGUCGGCGgcGGGGCc -3'
miRNA:   3'- -UCGUa-UCGGagcCGGUCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 120928 0.66 0.804865
Target:  5'- gGGCGgGGCgggCGcGCgGGCGUGGuGGCu -3'
miRNA:   3'- -UCGUaUCGga-GC-CGgUCGCAUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 52892 0.66 0.810201
Target:  5'- aGGCgAUGGCCaguccuagguccgCGGgCAGCGgcucGGGGCg -3'
miRNA:   3'- -UCG-UAUCGGa------------GCCgGUCGCau--CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 98285 0.66 0.82242
Target:  5'- cGCGUAGagCUCGGCCGcCGccGAGcGCa -3'
miRNA:   3'- uCGUAUCg-GAGCCGGUcGCauCUC-CG- -5'
6492 5' -57.4 NC_001847.1 + 63775 0.66 0.794935
Target:  5'- gGGCAUcGCCUgcaUGGCCGGCaucaccuGUGGuGGGUu -3'
miRNA:   3'- -UCGUAuCGGA---GCCGGUCG-------CAUC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 5209 0.66 0.786675
Target:  5'- cGGCucucucGCCgcggCGGCCGGCG---GGGCg -3'
miRNA:   3'- -UCGuau---CGGa---GCCGGUCGCaucUCCG- -5'
6492 5' -57.4 NC_001847.1 + 42085 0.66 0.786675
Target:  5'- cGCAUcGGCCUCGcgguGCCGGCaccGUccaggcgccGGGGGCc -3'
miRNA:   3'- uCGUA-UCGGAGC----CGGUCG---CA---------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 35827 0.66 0.795845
Target:  5'- uAGCuucGGCCccCGGCgGGCGgcGAugGGCg -3'
miRNA:   3'- -UCGua-UCGGa-GCCGgUCGCauCU--CCG- -5'
6492 5' -57.4 NC_001847.1 + 32923 0.66 0.786675
Target:  5'- cGCGgacgGGaggaGGCCGGCGgcGGGGCc -3'
miRNA:   3'- uCGUa---UCggagCCGGUCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 79575 0.66 0.786675
Target:  5'- cGCcgGGCUcgCGGCCucuucgggcgggGGCGccGGGGGCg -3'
miRNA:   3'- uCGuaUCGGa-GCCGG------------UCGCa-UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 10129 0.66 0.813726
Target:  5'- cGGCGagcgGGCC-CGGCCguAGCGcgagcgGGAGGg -3'
miRNA:   3'- -UCGUa---UCGGaGCCGG--UCGCa-----UCUCCg -5'
6492 5' -57.4 NC_001847.1 + 133298 0.67 0.748674
Target:  5'- cGCAc-GCCUgGGCCGgGCGcUGGAcgGGCg -3'
miRNA:   3'- uCGUauCGGAgCCGGU-CGC-AUCU--CCG- -5'
6492 5' -57.4 NC_001847.1 + 33504 0.67 0.748674
Target:  5'- cGGCGcgGGCggCGGCgGGCGccgccgcGGAGGCg -3'
miRNA:   3'- -UCGUa-UCGgaGCCGgUCGCa------UCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.