miRNA display CGI


Results 81 - 100 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 14371 0.67 0.748674
Target:  5'- cGCAgauGCCaCGGCCgcGGCcGUGGuGGCc -3'
miRNA:   3'- uCGUau-CGGaGCCGG--UCG-CAUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 4766 0.67 0.729012
Target:  5'- cGGCucAUGGCCUCGGCgaaggGGCGUuccagcauGAcGGCa -3'
miRNA:   3'- -UCG--UAUCGGAGCCGg----UCGCAu-------CU-CCG- -5'
6492 5' -57.4 NC_001847.1 + 132339 0.67 0.729012
Target:  5'- cGGCGcGGCUggCGGCCGcgcucGCGgcccUGGAGGCc -3'
miRNA:   3'- -UCGUaUCGGa-GCCGGU-----CGC----AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 55446 0.67 0.73889
Target:  5'- uGCAgcGCCUgGcGCCGGCG---GGGCg -3'
miRNA:   3'- uCGUauCGGAgC-CGGUCGCaucUCCG- -5'
6492 5' -57.4 NC_001847.1 + 23464 0.67 0.736922
Target:  5'- cGCGUccgccGCCUCGGCCAucgcgcucggcgcGCGUcgcuacaGGuGGCa -3'
miRNA:   3'- uCGUAu----CGGAGCCGGU-------------CGCA-------UCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 104483 0.67 0.729012
Target:  5'- cGGCcgGGCCgucgcgCGGCCAGUucucGGGGUc -3'
miRNA:   3'- -UCGuaUCGGa-----GCCGGUCGcau-CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 84553 0.67 0.729012
Target:  5'- gGGCGUGcGCCUcguacaCGGCCuccucGuCGUcAGAGGCg -3'
miRNA:   3'- -UCGUAU-CGGA------GCCGGu----C-GCA-UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 35454 0.67 0.729012
Target:  5'- cGCGacgcGGCCgCGGCgcgagaGGCGcUAGAGGCg -3'
miRNA:   3'- uCGUa---UCGGaGCCGg-----UCGC-AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 124434 0.67 0.758354
Target:  5'- uGGC--GGCgCUUGGCCGGCGcGGgccgcgcccGGGCg -3'
miRNA:   3'- -UCGuaUCG-GAGCCGGUCGCaUC---------UCCG- -5'
6492 5' -57.4 NC_001847.1 + 83262 0.67 0.777363
Target:  5'- aAGCGcGGCgggGGCgGGCGcAGAGGCg -3'
miRNA:   3'- -UCGUaUCGgagCCGgUCGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 29728 0.67 0.777363
Target:  5'- cGCGggAGCggUGGCCAaCGUAGAcGGCu -3'
miRNA:   3'- uCGUa-UCGgaGCCGGUcGCAUCU-CCG- -5'
6492 5' -57.4 NC_001847.1 + 6676 0.67 0.777363
Target:  5'- aGGCuaGGCCgcggCGGCCGGCc---GGGCg -3'
miRNA:   3'- -UCGuaUCGGa---GCCGGUCGcaucUCCG- -5'
6492 5' -57.4 NC_001847.1 + 50128 0.67 0.774544
Target:  5'- cGGC-UGGCCUCGGUgauggcggcggacaCGGCcGUGucgaucGAGGCg -3'
miRNA:   3'- -UCGuAUCGGAGCCG--------------GUCG-CAU------CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 3812 0.67 0.758354
Target:  5'- cGGCAcggGGCgUCGGCCgcgAGCGU---GGCg -3'
miRNA:   3'- -UCGUa--UCGgAGCCGG---UCGCAucuCCG- -5'
6492 5' -57.4 NC_001847.1 + 3527 0.67 0.758354
Target:  5'- gGGcCGUGGCCgacuaCGGCCgcgAGCGcGGcGGCg -3'
miRNA:   3'- -UC-GUAUCGGa----GCCGG---UCGCaUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 35990 0.67 0.758354
Target:  5'- cGCGcAGCCgcgcugcaggCGGCCgcgGGCGUGGugcugGGGCu -3'
miRNA:   3'- uCGUaUCGGa---------GCCGG---UCGCAUC-----UCCG- -5'
6492 5' -57.4 NC_001847.1 + 92719 0.67 0.757391
Target:  5'- uGGCAgAGCCUCGcgugcucGCgCAgcGCGUGGcAGGCc -3'
miRNA:   3'- -UCGUaUCGGAGC-------CG-GU--CGCAUC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 33504 0.67 0.748674
Target:  5'- cGGCGcgGGCggCGGCgGGCGccgccgcGGAGGCg -3'
miRNA:   3'- -UCGUa-UCGgaGCCGgUCGCa------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 133298 0.67 0.748674
Target:  5'- cGCAc-GCCUgGGCCGgGCGcUGGAcgGGCg -3'
miRNA:   3'- uCGUauCGGAgCCGGU-CGC-AUCU--CCG- -5'
6492 5' -57.4 NC_001847.1 + 133972 0.67 0.781105
Target:  5'- cGGCgGUGGCCUucugcgCGGCCGcgcugccggagccgcGCGccGAGGCg -3'
miRNA:   3'- -UCG-UAUCGGA------GCCGGU---------------CGCauCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.