miRNA display CGI


Results 101 - 120 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 55064 0.67 0.73495
Target:  5'- gAGC-UGGCCgcguuuaugcuggCGGCC-GCG-GGGGGCg -3'
miRNA:   3'- -UCGuAUCGGa------------GCCGGuCGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 95815 0.67 0.76792
Target:  5'- uGCuUGGaCC-CGGCuCGGCGgcAGGGGCa -3'
miRNA:   3'- uCGuAUC-GGaGCCG-GUCGCa-UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 82469 0.67 0.774544
Target:  5'- gGGCccGGCCcCGGCCacggggccgccgaaGGCGUAGGucgcgucuGGCg -3'
miRNA:   3'- -UCGuaUCGGaGCCGG--------------UCGCAUCU--------CCG- -5'
6492 5' -57.4 NC_001847.1 + 42933 0.67 0.777363
Target:  5'- uGC-UGGCCgcccaagCGGCCGacgccgcgcGCGggGGGGGCg -3'
miRNA:   3'- uCGuAUCGGa------GCCGGU---------CGCa-UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 39758 0.67 0.777363
Target:  5'- cGGCGccGGCCUCaGaGCCGGCGgcGcGGUc -3'
miRNA:   3'- -UCGUa-UCGGAG-C-CGGUCGCauCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 31159 0.67 0.781105
Target:  5'- cGGCgGUGGCCUucugcgCGGCCGcgcugccggagccgcGCGccGAGGCg -3'
miRNA:   3'- -UCG-UAUCGGA------GCCGGU---------------CGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 78972 0.67 0.777363
Target:  5'- cGCGcAGCCUCGGg-GGCGUGcucGGGCg -3'
miRNA:   3'- uCGUaUCGGAGCCggUCGCAUc--UCCG- -5'
6492 5' -57.4 NC_001847.1 + 133972 0.67 0.781105
Target:  5'- cGGCgGUGGCCUucugcgCGGCCGcgcugccggagccgcGCGccGAGGCg -3'
miRNA:   3'- -UCG-UAUCGGA------GCCGGU---------------CGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 83262 0.67 0.777363
Target:  5'- aAGCGcGGCgggGGCgGGCGcAGAGGCg -3'
miRNA:   3'- -UCGUaUCGgagCCGgUCGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 58269 0.67 0.76792
Target:  5'- aGGCA-GGCCuccaugugcUCGGCC-GCGgcGAcGGCg -3'
miRNA:   3'- -UCGUaUCGG---------AGCCGGuCGCauCU-CCG- -5'
6492 5' -57.4 NC_001847.1 + 102709 0.67 0.76792
Target:  5'- cGGCAgcGCCUgGGCCaccgccccgaaaAGCGgcUGGAcGGCc -3'
miRNA:   3'- -UCGUauCGGAgCCGG------------UCGC--AUCU-CCG- -5'
6492 5' -57.4 NC_001847.1 + 16679 0.67 0.758354
Target:  5'- cGCGcAGCCUUGGCUgcgcgGGCGagccGGcAGGCg -3'
miRNA:   3'- uCGUaUCGGAGCCGG-----UCGCa---UC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 84553 0.67 0.729012
Target:  5'- gGGCGUGcGCCUcguacaCGGCCuccucGuCGUcAGAGGCg -3'
miRNA:   3'- -UCGUAU-CGGA------GCCGGu----C-GCA-UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 104483 0.67 0.729012
Target:  5'- cGGCcgGGCCgucgcgCGGCCAGUucucGGGGUc -3'
miRNA:   3'- -UCGuaUCGGa-----GCCGGUCGcau-CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 35454 0.67 0.729012
Target:  5'- cGCGacgcGGCCgCGGCgcgagaGGCGcUAGAGGCg -3'
miRNA:   3'- uCGUa---UCGGaGCCGg-----UCGC-AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 132339 0.67 0.729012
Target:  5'- cGGCGcGGCUggCGGCCGcgcucGCGgcccUGGAGGCc -3'
miRNA:   3'- -UCGUaUCGGa-GCCGGU-----CGC----AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 4766 0.67 0.729012
Target:  5'- cGGCucAUGGCCUCGGCgaaggGGCGUuccagcauGAcGGCa -3'
miRNA:   3'- -UCG--UAUCGGAGCCGg----UCGCAu-------CU-CCG- -5'
6492 5' -57.4 NC_001847.1 + 19845 0.67 0.758354
Target:  5'- cAGCGc--CCUUGGCCcGCGcccGGGGGCg -3'
miRNA:   3'- -UCGUaucGGAGCCGGuCGCa--UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 88233 0.67 0.758354
Target:  5'- cGCcggAGCCgaGGCCGGCGcggcgcGGGGCg -3'
miRNA:   3'- uCGua-UCGGagCCGGUCGCau----CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 30807 0.67 0.777363
Target:  5'- cGCGUcuGCCgccgCGGCaaacaCGGCGgcGGGGCc -3'
miRNA:   3'- uCGUAu-CGGa---GCCG-----GUCGCauCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.