miRNA display CGI


Results 121 - 140 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 134472 0.67 0.7477
Target:  5'- uGGCAUAGgCgCGGCCAacgaagugcacggGUGUAGuguGGGCc -3'
miRNA:   3'- -UCGUAUCgGaGCCGGU-------------CGCAUC---UCCG- -5'
6492 5' -57.4 NC_001847.1 + 37475 0.67 0.73889
Target:  5'- uGGCcgGGCC-CGGCCuggcAGCGgcgGGucuGGGCc -3'
miRNA:   3'- -UCGuaUCGGaGCCGG----UCGCa--UC---UCCG- -5'
6492 5' -57.4 NC_001847.1 + 98818 0.67 0.729012
Target:  5'- cGGCAcgAGCUUaaaguaGGCUu-CGUAGAGGCg -3'
miRNA:   3'- -UCGUa-UCGGAg-----CCGGucGCAUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 23464 0.67 0.736922
Target:  5'- cGCGUccgccGCCUCGGCCAucgcgcucggcgcGCGUcgcuacaGGuGGCa -3'
miRNA:   3'- uCGUAu----CGGAGCCGGU-------------CGCA-------UCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 55064 0.67 0.73495
Target:  5'- gAGC-UGGCCgcguuuaugcuggCGGCC-GCG-GGGGGCg -3'
miRNA:   3'- -UCGuAUCGGa------------GCCGGuCGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 84553 0.67 0.729012
Target:  5'- gGGCGUGcGCCUcguacaCGGCCuccucGuCGUcAGAGGCg -3'
miRNA:   3'- -UCGUAU-CGGA------GCCGGu----C-GCA-UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 104483 0.67 0.729012
Target:  5'- cGGCcgGGCCgucgcgCGGCCAGUucucGGGGUc -3'
miRNA:   3'- -UCGuaUCGGa-----GCCGGUCGcau-CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 35454 0.67 0.729012
Target:  5'- cGCGacgcGGCCgCGGCgcgagaGGCGcUAGAGGCg -3'
miRNA:   3'- uCGUa---UCGGaGCCGg-----UCGC-AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 132339 0.67 0.729012
Target:  5'- cGGCGcGGCUggCGGCCGcgcucGCGgcccUGGAGGCc -3'
miRNA:   3'- -UCGUaUCGGa-GCCGGU-----CGC----AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 4766 0.67 0.729012
Target:  5'- cGGCucAUGGCCUCGGCgaaggGGCGUuccagcauGAcGGCa -3'
miRNA:   3'- -UCG--UAUCGGAGCCGg----UCGCAu-------CU-CCG- -5'
6492 5' -57.4 NC_001847.1 + 31159 0.67 0.781105
Target:  5'- cGGCgGUGGCCUucugcgCGGCCGcgcugccggagccgcGCGccGAGGCg -3'
miRNA:   3'- -UCG-UAUCGGA------GCCGGU---------------CGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 69615 0.67 0.729012
Target:  5'- gAGCGcccCCUCGGUgAGCGcGGAGaGCg -3'
miRNA:   3'- -UCGUaucGGAGCCGgUCGCaUCUC-CG- -5'
6492 5' -57.4 NC_001847.1 + 57834 0.67 0.729012
Target:  5'- cGCGUcGaaccaCUCGGUCAGUGUGcGGGCc -3'
miRNA:   3'- uCGUAuCg----GAGCCGGUCGCAUcUCCG- -5'
6492 5' -57.4 NC_001847.1 + 1670 0.67 0.729012
Target:  5'- cGGCcgGGCCgucgcgCGGCCAGUucucGGGGUc -3'
miRNA:   3'- -UCGuaUCGGa-----GCCGGUCGcau-CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 29526 0.67 0.729012
Target:  5'- cGGCGcGGCUggCGGCCGcgcucGCGgcccUGGAGGCc -3'
miRNA:   3'- -UCGUaUCGGa-GCCGGU-----CGC----AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 62727 0.67 0.729012
Target:  5'- cGCGUugcGGCCgUGGCCGuccccGCGUcGGGGCc -3'
miRNA:   3'- uCGUA---UCGGaGCCGGU-----CGCAuCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 127346 0.67 0.729012
Target:  5'- cGGCu--GCCgCGGCaggGGCGgcGGGGCc -3'
miRNA:   3'- -UCGuauCGGaGCCGg--UCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 91563 0.68 0.719049
Target:  5'- cAGCGUAaguccgucguacGCCUCGGCCAuccucGCGgcGcucgcGGCg -3'
miRNA:   3'- -UCGUAU------------CGGAGCCGGU-----CGCauCu----CCG- -5'
6492 5' -57.4 NC_001847.1 + 133895 0.68 0.719049
Target:  5'- cGGCGc-GCCgcugCGGCCGGUGUAccuGGCc -3'
miRNA:   3'- -UCGUauCGGa---GCCGGUCGCAUcu-CCG- -5'
6492 5' -57.4 NC_001847.1 + 124544 0.68 0.719049
Target:  5'- gGGCGcgGGCCggcgcCGGCCcGCGcgcgcggGGGGGCc -3'
miRNA:   3'- -UCGUa-UCGGa----GCCGGuCGCa------UCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.