Results 141 - 160 of 300 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6492 | 5' | -57.4 | NC_001847.1 | + | 91563 | 0.68 | 0.719049 |
Target: 5'- cAGCGUAaguccgucguacGCCUCGGCCAuccucGCGgcGcucgcGGCg -3' miRNA: 3'- -UCGUAU------------CGGAGCCGGU-----CGCauCu----CCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 124544 | 0.68 | 0.719049 |
Target: 5'- gGGCGcgGGCCggcgcCGGCCcGCGcgcgcggGGGGGCc -3' miRNA: 3'- -UCGUa-UCGGa----GCCGGuCGCa------UCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 133895 | 0.68 | 0.719049 |
Target: 5'- cGGCGc-GCCgcugCGGCCGGUGUAccuGGCc -3' miRNA: 3'- -UCGUauCGGa---GCCGGUCGCAUcu-CCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 29509 | 0.68 | 0.675462 |
Target: 5'- gGGCGgcGCUUCGGCCGcagagcucgcccgcGCGgcGcGGGCg -3' miRNA: 3'- -UCGUauCGGAGCCGGU--------------CGCauC-UCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 26906 | 0.68 | 0.70901 |
Target: 5'- -uCAUGGCCUgcaGGCaGGCGUAGAaGCg -3' miRNA: 3'- ucGUAUCGGAg--CCGgUCGCAUCUcCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 34817 | 0.68 | 0.719049 |
Target: 5'- uGGCGcGGCa--GGCCgaccgGGCGcUGGAGGCg -3' miRNA: 3'- -UCGUaUCGgagCCGG-----UCGC-AUCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 18422 | 0.68 | 0.688742 |
Target: 5'- uGCAgGGCCUUGGCCAcguGCGccGcGGCc -3' miRNA: 3'- uCGUaUCGGAGCCGGU---CGCauCuCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 100883 | 0.68 | 0.678532 |
Target: 5'- cGGCAggGGCg-CGGCCGGCGggagacGGGGUc -3' miRNA: 3'- -UCGUa-UCGgaGCCGGUCGCau----CUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 70751 | 0.68 | 0.677509 |
Target: 5'- aGGCggaccugGUGGCCguuggggacCGGCUAGUGUuuuuGGAGGCc -3' miRNA: 3'- -UCG-------UAUCGGa--------GCCGGUCGCA----UCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 103045 | 0.68 | 0.688742 |
Target: 5'- gAGCccgGGCCUCGcGCCccgacgcccGGCGcccAGGGGCc -3' miRNA: 3'- -UCGua-UCGGAGC-CGG---------UCGCa--UCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 34391 | 0.68 | 0.668284 |
Target: 5'- cGGCGgccGCCgccgCGGCagacgCGGCGcUGGGGGCg -3' miRNA: 3'- -UCGUau-CGGa---GCCG-----GUCGC-AUCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 52107 | 0.68 | 0.698905 |
Target: 5'- cGGuCAUGGCCacgCGGCCcGCgGUAGugcuGGGCc -3' miRNA: 3'- -UC-GUAUCGGa--GCCGGuCG-CAUC----UCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 32727 | 0.68 | 0.706994 |
Target: 5'- gAGCGccucucGGCCUcCGGCCGGCGgcuauuuucgcgGGcGGCg -3' miRNA: 3'- -UCGUa-----UCGGA-GCCGGUCGCa-----------UCuCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 30625 | 0.68 | 0.70901 |
Target: 5'- cGCAgcGCCgcaaacgcggCGGCCGcCGaAGAGGCg -3' miRNA: 3'- uCGUauCGGa---------GCCGGUcGCaUCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 17706 | 0.68 | 0.699918 |
Target: 5'- cGGCcacGCCgcagugcacguacagCGGCuCGGCGUAcGAGGCg -3' miRNA: 3'- -UCGuauCGGa--------------GCCG-GUCGCAU-CUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 90921 | 0.68 | 0.70901 |
Target: 5'- uAGCAgcAGCCg-GGCgaCGGCGUAGugGGGCa -3' miRNA: 3'- -UCGUa-UCGGagCCG--GUCGCAUC--UCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 35883 | 0.68 | 0.70901 |
Target: 5'- cGGCAgcuggAGUCggCGGCggCGGCGUGGGacGGCg -3' miRNA: 3'- -UCGUa----UCGGa-GCCG--GUCGCAUCU--CCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 94180 | 0.68 | 0.70901 |
Target: 5'- cGCGgccGCCUCGcGCgGGCaGUucGAGGCg -3' miRNA: 3'- uCGUau-CGGAGC-CGgUCG-CAu-CUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 18508 | 0.68 | 0.719049 |
Target: 5'- cGCGgcuGCCgaGGCCAGCGcUGcGGGCg -3' miRNA: 3'- uCGUau-CGGagCCGGUCGC-AUcUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 35629 | 0.68 | 0.688742 |
Target: 5'- cGGCGgcGCUggGGCCAGCGcUGGAccgcgccgccucGGCg -3' miRNA: 3'- -UCGUauCGGagCCGGUCGC-AUCU------------CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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