miRNA display CGI


Results 61 - 80 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 13798 0.71 0.545319
Target:  5'- uGCGUAGCC--GGCgCAGCGguguacGGGGGCc -3'
miRNA:   3'- uCGUAUCGGagCCG-GUCGCa-----UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 14677 0.71 0.535301
Target:  5'- cGGCGcGGCCggCGGCgCGGCGaUGGAgcaGGCg -3'
miRNA:   3'- -UCGUaUCGGa-GCCG-GUCGC-AUCU---CCG- -5'
6492 5' -57.4 NC_001847.1 + 135135 0.71 0.535301
Target:  5'- cGCAgggGGCCcgcgCGGCgCGGCGcGGAGGg -3'
miRNA:   3'- uCGUa--UCGGa---GCCG-GUCGCaUCUCCg -5'
6492 5' -57.4 NC_001847.1 + 104307 0.71 0.534302
Target:  5'- cGGCGgcGCCUCGggguagaGCCGcGCGUAGGcGGCc -3'
miRNA:   3'- -UCGUauCGGAGC-------CGGU-CGCAUCU-CCG- -5'
6492 5' -57.4 NC_001847.1 + 12464 0.71 0.545319
Target:  5'- cGGCGgAGCCUccgCGGCUucccGCGUGGcGGCg -3'
miRNA:   3'- -UCGUaUCGGA---GCCGGu---CGCAUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 32380 0.71 0.545319
Target:  5'- cGGCGUcgcgGGCgUCGcGCCuuGCGUGGGGGg -3'
miRNA:   3'- -UCGUA----UCGgAGC-CGGu-CGCAUCUCCg -5'
6492 5' -57.4 NC_001847.1 + 50569 0.71 0.545319
Target:  5'- cGGCGUcGCCUCugacgacgaggaGGCC-GUGUAcGAGGCg -3'
miRNA:   3'- -UCGUAuCGGAG------------CCGGuCGCAU-CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 132189 0.7 0.58593
Target:  5'- uGCGc-GCCgaggCGGCCGccGCGcUGGAGGCg -3'
miRNA:   3'- uCGUauCGGa---GCCGGU--CGC-AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 65902 0.7 0.596184
Target:  5'- cGCGUAGUa--GGCCAGCGUugccGcGGCg -3'
miRNA:   3'- uCGUAUCGgagCCGGUCGCAu---CuCCG- -5'
6492 5' -57.4 NC_001847.1 + 68057 0.7 0.555398
Target:  5'- cGGC--GGCCUCGcggcgcGCCuGCGgcGGGGCg -3'
miRNA:   3'- -UCGuaUCGGAGC------CGGuCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 102952 0.7 0.606465
Target:  5'- cGCG-GGCCUCGGgccCCGGCcgGGGGGCc -3'
miRNA:   3'- uCGUaUCGGAGCC---GGUCGcaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 65107 0.7 0.596184
Target:  5'- gAGCG-AGCCgcggcUCGGCUGGCGguGGGGCu -3'
miRNA:   3'- -UCGUaUCGG-----AGCCGGUCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 38965 0.7 0.555398
Target:  5'- cGcCAUGGCggCGGCC-GCGgcGGGGCu -3'
miRNA:   3'- uC-GUAUCGgaGCCGGuCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 67692 0.7 0.56553
Target:  5'- cGGCAUAGCuCUCGGCgAG-GUGcucGAGcGCg -3'
miRNA:   3'- -UCGUAUCG-GAGCCGgUCgCAU---CUC-CG- -5'
6492 5' -57.4 NC_001847.1 + 111420 0.7 0.56553
Target:  5'- gGGC--GGCgCUCGGCCGGgGgcGGGGg -3'
miRNA:   3'- -UCGuaUCG-GAGCCGGUCgCauCUCCg -5'
6492 5' -57.4 NC_001847.1 + 17618 0.7 0.596184
Target:  5'- cGCAcGGCCUCGucgucGCCGcGCGUGGAG-Cg -3'
miRNA:   3'- uCGUaUCGGAGC-----CGGU-CGCAUCUCcG- -5'
6492 5' -57.4 NC_001847.1 + 17791 0.7 0.57571
Target:  5'- cGGCGgGGCuuugCUCGGCC-GCG-GGGGGCg -3'
miRNA:   3'- -UCGUaUCG----GAGCCGGuCGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 8460 0.7 0.584906
Target:  5'- uGGCAUGGCaauaUCGuacCCGGCGUccucgucgcguuuGGGGGCg -3'
miRNA:   3'- -UCGUAUCGg---AGCc--GGUCGCA-------------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 29246 0.7 0.58593
Target:  5'- uGCAUGGCCccgCGGCCGcGCacggacuacGUGGcGGCg -3'
miRNA:   3'- uCGUAUCGGa--GCCGGU-CG---------CAUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 120746 0.7 0.58593
Target:  5'- gAGCGgGGCCUCGcGCCAGCuc---GGCg -3'
miRNA:   3'- -UCGUaUCGGAGC-CGGUCGcaucuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.