miRNA display CGI


Results 101 - 120 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 89296 0.7 0.555398
Target:  5'- cGGCcgaGGCCUCGGCCgugccgcccAGCG-AGuGGCc -3'
miRNA:   3'- -UCGua-UCGGAGCCGG---------UCGCaUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 74675 0.69 0.635331
Target:  5'- cGGCcgAGCCgcggcaggacggCGGCCGGCGcuuuugccugUAcGGGGCg -3'
miRNA:   3'- -UCGuaUCGGa-----------GCCGGUCGC----------AU-CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 13139 0.69 0.616766
Target:  5'- cGCGccGCCUgccgCGGCCGGCGguuGGGCu -3'
miRNA:   3'- uCGUauCGGA----GCCGGUCGCaucUCCG- -5'
6492 5' -57.4 NC_001847.1 + 42723 0.69 0.647706
Target:  5'- uGGCGcGGCgggCGGCCgcgcgGGCGgcGGGGCg -3'
miRNA:   3'- -UCGUaUCGga-GCCGG-----UCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 90748 0.69 0.616766
Target:  5'- cGCGUGGCCg-GGCCccgggagcgggAGCGcccuuGAGGCg -3'
miRNA:   3'- uCGUAUCGGagCCGG-----------UCGCau---CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 28992 0.69 0.616766
Target:  5'- -cCAUGGCCUacccggaGGCCGGCGccGGcGGCa -3'
miRNA:   3'- ucGUAUCGGAg------CCGGUCGCa-UCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 89764 0.69 0.637394
Target:  5'- cGGCAcguGCa-CGcGCCGGCGUAcGAGGCc -3'
miRNA:   3'- -UCGUau-CGgaGC-CGGUCGCAU-CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 71448 0.69 0.637394
Target:  5'- gGGCGcGGCUUUGaGCUgAGCGUGGAccGGCa -3'
miRNA:   3'- -UCGUaUCGGAGC-CGG-UCGCAUCU--CCG- -5'
6492 5' -57.4 NC_001847.1 + 48394 0.69 0.616766
Target:  5'- gGGCcgGGCCUCGGCggcaaAGCG-GGAcGCg -3'
miRNA:   3'- -UCGuaUCGGAGCCGg----UCGCaUCUcCG- -5'
6492 5' -57.4 NC_001847.1 + 49589 0.69 0.647706
Target:  5'- cGGCGgcGCCUgGGCgCAGCGggAGcucGGCg -3'
miRNA:   3'- -UCGUauCGGAgCCG-GUCGCa-UCu--CCG- -5'
6492 5' -57.4 NC_001847.1 + 90849 0.69 0.647706
Target:  5'- gAGCGgcgccccggGGCCggGGCUGGUGUcGAGGCc -3'
miRNA:   3'- -UCGUa--------UCGGagCCGGUCGCAuCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 118898 0.69 0.647706
Target:  5'- gGGCcggGGCCggGGCCGGgGccGAGGCc -3'
miRNA:   3'- -UCGua-UCGGagCCGGUCgCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 98955 0.69 0.616766
Target:  5'- cAGCG-AGCCcaCGcGCCacGGCGUAGGGGUu -3'
miRNA:   3'- -UCGUaUCGGa-GC-CGG--UCGCAUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 33926 0.69 0.616766
Target:  5'- uGGC--AGCCuUCGGCCGGUaccgcGAGGCg -3'
miRNA:   3'- -UCGuaUCGG-AGCCGGUCGcau--CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 131805 0.69 0.616766
Target:  5'- -cCAUGGCCUacccggaGGCCGGCGccGGcGGCa -3'
miRNA:   3'- ucGUAUCGGAg------CCGGUCGCa-UCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 30734 0.69 0.616766
Target:  5'- cGGaCGUGGCCgacugGGCgGGCGUAGAccgcGGCc -3'
miRNA:   3'- -UC-GUAUCGGag---CCGgUCGCAUCU----CCG- -5'
6492 5' -57.4 NC_001847.1 + 98736 0.69 0.658006
Target:  5'- aAGCcggGGCCggGGCCGGgGccGGGGCa -3'
miRNA:   3'- -UCGua-UCGGagCCGGUCgCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 6748 0.69 0.647706
Target:  5'- gGGCGUcGUCUgcggugCGGCCGGUGc-GAGGCg -3'
miRNA:   3'- -UCGUAuCGGA------GCCGGUCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 34137 0.69 0.647706
Target:  5'- cGCgGUGGCCgccgCGGCgAGCGcgcugcgcGAGGCg -3'
miRNA:   3'- uCG-UAUCGGa---GCCGgUCGCau------CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 15306 0.69 0.658006
Target:  5'- cGGCAcGGCgUCgggGGCCgcgGGCGUagcGGGGGCg -3'
miRNA:   3'- -UCGUaUCGgAG---CCGG---UCGCA---UCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.