miRNA display CGI


Results 121 - 140 of 300 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 49589 0.69 0.647706
Target:  5'- cGGCGgcGCCUgGGCgCAGCGggAGcucGGCg -3'
miRNA:   3'- -UCGUauCGGAgCCG-GUCGCa-UCu--CCG- -5'
6492 5' -57.4 NC_001847.1 + 98955 0.69 0.616766
Target:  5'- cAGCG-AGCCcaCGcGCCacGGCGUAGGGGUu -3'
miRNA:   3'- -UCGUaUCGGa-GC-CGG--UCGCAUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 94180 0.68 0.70901
Target:  5'- cGCGgccGCCUCGcGCgGGCaGUucGAGGCg -3'
miRNA:   3'- uCGUau-CGGAGC-CGgUCG-CAu-CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 106540 0.68 0.70901
Target:  5'- cGCGUAGCgCgCGGCCGccucGCGgaucucGGGGCa -3'
miRNA:   3'- uCGUAUCG-GaGCCGGU----CGCau----CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 133895 0.68 0.719049
Target:  5'- cGGCGc-GCCgcugCGGCCGGUGUAccuGGCc -3'
miRNA:   3'- -UCGUauCGGa---GCCGGUCGCAUcu-CCG- -5'
6492 5' -57.4 NC_001847.1 + 124544 0.68 0.719049
Target:  5'- gGGCGcgGGCCggcgcCGGCCcGCGcgcgcggGGGGGCc -3'
miRNA:   3'- -UCGUa-UCGGa----GCCGGuCGCa------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 91563 0.68 0.719049
Target:  5'- cAGCGUAaguccgucguacGCCUCGGCCAuccucGCGgcGcucgcGGCg -3'
miRNA:   3'- -UCGUAU------------CGGAGCCGGU-----CGCauCu----CCG- -5'
6492 5' -57.4 NC_001847.1 + 29446 0.68 0.719049
Target:  5'- gGGCGUGgcGCCgcccgCGGCCGaagcgccgcccGCGgccGAGGCg -3'
miRNA:   3'- -UCGUAU--CGGa----GCCGGU-----------CGCau-CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 97908 0.68 0.719049
Target:  5'- cGCGuUGGCCUCGGCaaaguGCGUgcAGugaacgaaGGGCg -3'
miRNA:   3'- uCGU-AUCGGAGCCGgu---CGCA--UC--------UCCG- -5'
6492 5' -57.4 NC_001847.1 + 34817 0.68 0.719049
Target:  5'- uGGCGcGGCa--GGCCgaccgGGCGcUGGAGGCg -3'
miRNA:   3'- -UCGUaUCGgagCCGG-----UCGC-AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 35883 0.68 0.70901
Target:  5'- cGGCAgcuggAGUCggCGGCggCGGCGUGGGacGGCg -3'
miRNA:   3'- -UCGUa----UCGGa-GCCG--GUCGCAUCU--CCG- -5'
6492 5' -57.4 NC_001847.1 + 6367 0.68 0.668284
Target:  5'- gGGCGUAGCCgcugCGGC-AGC--AGaAGGCg -3'
miRNA:   3'- -UCGUAUCGGa---GCCGgUCGcaUC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 32727 0.68 0.706994
Target:  5'- gAGCGccucucGGCCUcCGGCCGGCGgcuauuuucgcgGGcGGCg -3'
miRNA:   3'- -UCGUa-----UCGGA-GCCGGUCGCa-----------UCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 26906 0.68 0.70901
Target:  5'- -uCAUGGCCUgcaGGCaGGCGUAGAaGCg -3'
miRNA:   3'- ucGUAUCGGAg--CCGgUCGCAUCUcCG- -5'
6492 5' -57.4 NC_001847.1 + 30625 0.68 0.70901
Target:  5'- cGCAgcGCCgcaaacgcggCGGCCGcCGaAGAGGCg -3'
miRNA:   3'- uCGUauCGGa---------GCCGGUcGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 90921 0.68 0.70901
Target:  5'- uAGCAgcAGCCg-GGCgaCGGCGUAGugGGGCa -3'
miRNA:   3'- -UCGUa-UCGGagCCG--GUCGCAUC--UCCG- -5'
6492 5' -57.4 NC_001847.1 + 52107 0.68 0.698905
Target:  5'- cGGuCAUGGCCacgCGGCCcGCgGUAGugcuGGGCc -3'
miRNA:   3'- -UC-GUAUCGGa--GCCGGuCG-CAUC----UCCG- -5'
6492 5' -57.4 NC_001847.1 + 103045 0.68 0.688742
Target:  5'- gAGCccgGGCCUCGcGCCccgacgcccGGCGcccAGGGGCc -3'
miRNA:   3'- -UCGua-UCGGAGC-CGG---------UCGCa--UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 18508 0.68 0.719049
Target:  5'- cGCGgcuGCCgaGGCCAGCGcUGcGGGCg -3'
miRNA:   3'- uCGUau-CGGagCCGGUCGC-AUcUCCG- -5'
6492 5' -57.4 NC_001847.1 + 19263 0.68 0.668284
Target:  5'- cGGCGcgAGCCggCGGCgCAGCGUcuguGcGGCg -3'
miRNA:   3'- -UCGUa-UCGGa-GCCG-GUCGCAu---CuCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.