miRNA display CGI


Results 81 - 100 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 32994 0.7 0.57571
Target:  5'- gGGCAgggcGGCCggagCGGCCGGgGggcgcgcGGGGCg -3'
miRNA:   3'- -UCGUa---UCGGa---GCCGGUCgCau-----CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 68443 0.7 0.57571
Target:  5'- cAGCAUGGCgCgggaGcGCCcGCuGUGGAGGCg -3'
miRNA:   3'- -UCGUAUCG-Gag--C-CGGuCG-CAUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 17791 0.7 0.57571
Target:  5'- cGGCGgGGCuuugCUCGGCC-GCG-GGGGGCg -3'
miRNA:   3'- -UCGUaUCG----GAGCCGGuCGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 119525 0.7 0.57571
Target:  5'- gGGCGgcGGCCgCGGCCGGCaGgcugggcaAGGGGCg -3'
miRNA:   3'- -UCGUa-UCGGaGCCGGUCG-Ca-------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 50099 0.7 0.57571
Target:  5'- aGGCu--GCCgcgcCGGgCGGCGUAGAGcGCc -3'
miRNA:   3'- -UCGuauCGGa---GCCgGUCGCAUCUC-CG- -5'
6492 5' -57.4 NC_001847.1 + 102404 0.7 0.57571
Target:  5'- cGCGaaaaUAGCCgcCGGCCGGaGgccgAGAGGCg -3'
miRNA:   3'- uCGU----AUCGGa-GCCGGUCgCa---UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 50083 0.7 0.57571
Target:  5'- uGGCAccGCgccccugaugCUCGGCCAGCugcUGGGGGCc -3'
miRNA:   3'- -UCGUauCG----------GAGCCGGUCGc--AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 8460 0.7 0.584906
Target:  5'- uGGCAUGGCaauaUCGuacCCGGCGUccucgucgcguuuGGGGGCg -3'
miRNA:   3'- -UCGUAUCGg---AGCc--GGUCGCA-------------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 29246 0.7 0.58593
Target:  5'- uGCAUGGCCccgCGGCCGcGCacggacuacGUGGcGGCg -3'
miRNA:   3'- uCGUAUCGGa--GCCGGU-CG---------CAUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 120746 0.7 0.58593
Target:  5'- gAGCGgGGCCUCGcGCCAGCuc---GGCg -3'
miRNA:   3'- -UCGUaUCGGAGC-CGGUCGcaucuCCG- -5'
6492 5' -57.4 NC_001847.1 + 92387 0.7 0.58593
Target:  5'- gAGCAUGGCguagUCGGCCAcCcagGGGGGCg -3'
miRNA:   3'- -UCGUAUCGg---AGCCGGUcGca-UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 29376 0.7 0.58593
Target:  5'- uGCGc-GCCgaggCGGCCGccGCGcUGGAGGCg -3'
miRNA:   3'- uCGUauCGGa---GCCGGU--CGC-AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 132189 0.7 0.58593
Target:  5'- uGCGc-GCCgaggCGGCCGccGCGcUGGAGGCg -3'
miRNA:   3'- uCGUauCGGa---GCCGGU--CGC-AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 96421 0.7 0.590028
Target:  5'- uGGCGgGGCCggCGGCaGGCGcggccccggaggcacUGGAGGCg -3'
miRNA:   3'- -UCGUaUCGGa-GCCGgUCGC---------------AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 17618 0.7 0.596184
Target:  5'- cGCAcGGCCUCGucgucGCCGcGCGUGGAG-Cg -3'
miRNA:   3'- uCGUaUCGGAGC-----CGGU-CGCAUCUCcG- -5'
6492 5' -57.4 NC_001847.1 + 134631 0.7 0.596184
Target:  5'- cAGCGUGGgCUgggggcgggcCGGCagcaGGCGcGGAGGCg -3'
miRNA:   3'- -UCGUAUCgGA----------GCCGg---UCGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 65107 0.7 0.596184
Target:  5'- gAGCG-AGCCgcggcUCGGCUGGCGguGGGGCu -3'
miRNA:   3'- -UCGUaUCGG-----AGCCGGUCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 65902 0.7 0.596184
Target:  5'- cGCGUAGUa--GGCCAGCGUugccGcGGCg -3'
miRNA:   3'- uCGUAUCGgagCCGGUCGCAu---CuCCG- -5'
6492 5' -57.4 NC_001847.1 + 139 0.7 0.606465
Target:  5'- cGCG-GGCCUCGGgccCCGGCcgGGGGGCc -3'
miRNA:   3'- uCGUaUCGGAGCC---GGUCGcaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 72575 0.7 0.606465
Target:  5'- cGCAaAGCCgagcaaccgCGGCCgcGGCGgcagaAGGGGCa -3'
miRNA:   3'- uCGUaUCGGa--------GCCGG--UCGCa----UCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.