Results 101 - 120 of 300 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6492 | 5' | -57.4 | NC_001847.1 | + | 72575 | 0.7 | 0.606465 |
Target: 5'- cGCAaAGCCgagcaaccgCGGCCgcGGCGgcagaAGGGGCa -3' miRNA: 3'- uCGUaUCGGa--------GCCGG--UCGCa----UCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 30734 | 0.69 | 0.616766 |
Target: 5'- cGGaCGUGGCCgacugGGCgGGCGUAGAccgcGGCc -3' miRNA: 3'- -UC-GUAUCGGag---CCGgUCGCAUCU----CCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 33926 | 0.69 | 0.616766 |
Target: 5'- uGGC--AGCCuUCGGCCGGUaccgcGAGGCg -3' miRNA: 3'- -UCGuaUCGG-AGCCGGUCGcau--CUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 90748 | 0.69 | 0.616766 |
Target: 5'- cGCGUGGCCg-GGCCccgggagcgggAGCGcccuuGAGGCg -3' miRNA: 3'- uCGUAUCGGagCCGG-----------UCGCau---CUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 131805 | 0.69 | 0.616766 |
Target: 5'- -cCAUGGCCUacccggaGGCCGGCGccGGcGGCa -3' miRNA: 3'- ucGUAUCGGAg------CCGGUCGCa-UCuCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 28992 | 0.69 | 0.616766 |
Target: 5'- -cCAUGGCCUacccggaGGCCGGCGccGGcGGCa -3' miRNA: 3'- ucGUAUCGGAg------CCGGUCGCa-UCuCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 13139 | 0.69 | 0.616766 |
Target: 5'- cGCGccGCCUgccgCGGCCGGCGguuGGGCu -3' miRNA: 3'- uCGUauCGGA----GCCGGUCGCaucUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 48394 | 0.69 | 0.616766 |
Target: 5'- gGGCcgGGCCUCGGCggcaaAGCG-GGAcGCg -3' miRNA: 3'- -UCGuaUCGGAGCCGg----UCGCaUCUcCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 98955 | 0.69 | 0.616766 |
Target: 5'- cAGCG-AGCCcaCGcGCCacGGCGUAGGGGUu -3' miRNA: 3'- -UCGUaUCGGa-GC-CGG--UCGCAUCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 74675 | 0.69 | 0.635331 |
Target: 5'- cGGCcgAGCCgcggcaggacggCGGCCGGCGcuuuugccugUAcGGGGCg -3' miRNA: 3'- -UCGuaUCGGa-----------GCCGGUCGC----------AU-CUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 71448 | 0.69 | 0.637394 |
Target: 5'- gGGCGcGGCUUUGaGCUgAGCGUGGAccGGCa -3' miRNA: 3'- -UCGUaUCGGAGC-CGG-UCGCAUCU--CCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 22904 | 0.69 | 0.637394 |
Target: 5'- gAGCAUGGCugggCUgGGCUGGgGUGGgcuGGGCu -3' miRNA: 3'- -UCGUAUCG----GAgCCGGUCgCAUC---UCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 89764 | 0.69 | 0.637394 |
Target: 5'- cGGCAcguGCa-CGcGCCGGCGUAcGAGGCc -3' miRNA: 3'- -UCGUau-CGgaGC-CGGUCGCAU-CUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 6748 | 0.69 | 0.647706 |
Target: 5'- gGGCGUcGUCUgcggugCGGCCGGUGc-GAGGCg -3' miRNA: 3'- -UCGUAuCGGA------GCCGGUCGCauCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 34137 | 0.69 | 0.647706 |
Target: 5'- cGCgGUGGCCgccgCGGCgAGCGcgcugcgcGAGGCg -3' miRNA: 3'- uCG-UAUCGGa---GCCGgUCGCau------CUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 90849 | 0.69 | 0.647706 |
Target: 5'- gAGCGgcgccccggGGCCggGGCUGGUGUcGAGGCc -3' miRNA: 3'- -UCGUa--------UCGGagCCGGUCGCAuCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 42723 | 0.69 | 0.647706 |
Target: 5'- uGGCGcGGCgggCGGCCgcgcgGGCGgcGGGGCg -3' miRNA: 3'- -UCGUaUCGga-GCCGG-----UCGCauCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 49589 | 0.69 | 0.647706 |
Target: 5'- cGGCGgcGCCUgGGCgCAGCGggAGcucGGCg -3' miRNA: 3'- -UCGUauCGGAgCCG-GUCGCa-UCu--CCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 118898 | 0.69 | 0.647706 |
Target: 5'- gGGCcggGGCCggGGCCGGgGccGAGGCc -3' miRNA: 3'- -UCGua-UCGGagCCGGUCgCauCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 15306 | 0.69 | 0.658006 |
Target: 5'- cGGCAcGGCgUCgggGGCCgcgGGCGUagcGGGGGCg -3' miRNA: 3'- -UCGUaUCGgAG---CCGG---UCGCA---UCUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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