miRNA display CGI


Results 121 - 140 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 15306 0.69 0.658006
Target:  5'- cGGCAcGGCgUCgggGGCCgcgGGCGUagcGGGGGCg -3'
miRNA:   3'- -UCGUaUCGgAG---CCGG---UCGCA---UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 125717 0.69 0.658006
Target:  5'- gAGCAUGGCugggCUgGGCUGGgGUGGGcuGGCu -3'
miRNA:   3'- -UCGUAUCG----GAgCCGGUCgCAUCU--CCG- -5'
6492 5' -57.4 NC_001847.1 + 34391 0.68 0.668284
Target:  5'- cGGCGgccGCCgccgCGGCagacgCGGCGcUGGGGGCg -3'
miRNA:   3'- -UCGUau-CGGa---GCCG-----GUCGC-AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 31805 0.68 0.668284
Target:  5'- cGGcCGUGGCggUGGgCGGCGcGGGGGCa -3'
miRNA:   3'- -UC-GUAUCGgaGCCgGUCGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 19263 0.68 0.668284
Target:  5'- cGGCGcgAGCCggCGGCgCAGCGUcuguGcGGCg -3'
miRNA:   3'- -UCGUa-UCGGa-GCCG-GUCGCAu---CuCCG- -5'
6492 5' -57.4 NC_001847.1 + 6367 0.68 0.668284
Target:  5'- gGGCGUAGCCgcugCGGC-AGC--AGaAGGCg -3'
miRNA:   3'- -UCGUAUCGGa---GCCGgUCGcaUC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 29509 0.68 0.675462
Target:  5'- gGGCGgcGCUUCGGCCGcagagcucgcccgcGCGgcGcGGGCg -3'
miRNA:   3'- -UCGUauCGGAGCCGGU--------------CGCauC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 70751 0.68 0.677509
Target:  5'- aGGCggaccugGUGGCCguuggggacCGGCUAGUGUuuuuGGAGGCc -3'
miRNA:   3'- -UCG-------UAUCGGa--------GCCGGUCGCA----UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 70691 0.68 0.678532
Target:  5'- cGCGccGCCgCGGgCGGCGgcGGGGGCg -3'
miRNA:   3'- uCGUauCGGaGCCgGUCGCa-UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 100883 0.68 0.678532
Target:  5'- cGGCAggGGCg-CGGCCGGCGggagacGGGGUc -3'
miRNA:   3'- -UCGUa-UCGgaGCCGGUCGCau----CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 55150 0.68 0.678532
Target:  5'- cGCGUagAGCCccccagCGGCCAGaCGc-GGGGCg -3'
miRNA:   3'- uCGUA--UCGGa-----GCCGGUC-GCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 14350 0.68 0.678532
Target:  5'- uGGCGgcGCCUgCGgggaacgccGCCAGCGcgcggucgUAGAGGCu -3'
miRNA:   3'- -UCGUauCGGA-GC---------CGGUCGC--------AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 103045 0.68 0.688742
Target:  5'- gAGCccgGGCCUCGcGCCccgacgcccGGCGcccAGGGGCc -3'
miRNA:   3'- -UCGua-UCGGAGC-CGG---------UCGCa--UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 18422 0.68 0.688742
Target:  5'- uGCAgGGCCUUGGCCAcguGCGccGcGGCc -3'
miRNA:   3'- uCGUaUCGGAGCCGGU---CGCauCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 232 0.68 0.688742
Target:  5'- gAGCccgGGCCUCGcGCCccgacgcccGGCGcccAGGGGCc -3'
miRNA:   3'- -UCGua-UCGGAGC-CGG---------UCGCa--UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 35629 0.68 0.688742
Target:  5'- cGGCGgcGCUggGGCCAGCGcUGGAccgcgccgccucGGCg -3'
miRNA:   3'- -UCGUauCGGagCCGGUCGC-AUCU------------CCG- -5'
6492 5' -57.4 NC_001847.1 + 42018 0.68 0.698905
Target:  5'- cGGC--AGCC-CGGCCAGCuucgcccgguacGUAGAcuGGCu -3'
miRNA:   3'- -UCGuaUCGGaGCCGGUCG------------CAUCU--CCG- -5'
6492 5' -57.4 NC_001847.1 + 40952 0.68 0.698905
Target:  5'- cGCAgcGCCUCGaacuGCCcGCGc-GAGGCg -3'
miRNA:   3'- uCGUauCGGAGC----CGGuCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 116638 0.68 0.698905
Target:  5'- cAGCGcUGGCCUCGGC-AGCcgc-GGGCa -3'
miRNA:   3'- -UCGU-AUCGGAGCCGgUCGcaucUCCG- -5'
6492 5' -57.4 NC_001847.1 + 118458 0.68 0.698905
Target:  5'- uGGC--GGCCUCGuGCCuGCGgcGcaAGGCc -3'
miRNA:   3'- -UCGuaUCGGAGC-CGGuCGCauC--UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.