miRNA display CGI


Results 81 - 100 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 83262 0.67 0.777363
Target:  5'- aAGCGcGGCgggGGCgGGCGcAGAGGCg -3'
miRNA:   3'- -UCGUaUCGgagCCGgUCGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 78972 0.67 0.777363
Target:  5'- cGCGcAGCCUCGGg-GGCGUGcucGGGCg -3'
miRNA:   3'- uCGUaUCGGAGCCggUCGCAUc--UCCG- -5'
6492 5' -57.4 NC_001847.1 + 30807 0.67 0.777363
Target:  5'- cGCGUcuGCCgccgCGGCaaacaCGGCGgcGGGGCc -3'
miRNA:   3'- uCGUAu-CGGa---GCCG-----GUCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 29728 0.67 0.777363
Target:  5'- cGCGggAGCggUGGCCAaCGUAGAcGGCu -3'
miRNA:   3'- uCGUa-UCGgaGCCGGUcGCAUCU-CCG- -5'
6492 5' -57.4 NC_001847.1 + 42933 0.67 0.777363
Target:  5'- uGC-UGGCCgcccaagCGGCCGacgccgcgcGCGggGGGGGCg -3'
miRNA:   3'- uCGuAUCGGa------GCCGGU---------CGCa-UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 39758 0.67 0.777363
Target:  5'- cGGCGccGGCCUCaGaGCCGGCGgcGcGGUc -3'
miRNA:   3'- -UCGUa-UCGGAG-C-CGGUCGCauCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 6676 0.67 0.777363
Target:  5'- aGGCuaGGCCgcggCGGCCGGCc---GGGCg -3'
miRNA:   3'- -UCGuaUCGGa---GCCGGUCGcaucUCCG- -5'
6492 5' -57.4 NC_001847.1 + 50128 0.67 0.774544
Target:  5'- cGGC-UGGCCUCGGUgauggcggcggacaCGGCcGUGucgaucGAGGCg -3'
miRNA:   3'- -UCGuAUCGGAGCCG--------------GUCG-CAU------CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 82469 0.67 0.774544
Target:  5'- gGGCccGGCCcCGGCCacggggccgccgaaGGCGUAGGucgcgucuGGCg -3'
miRNA:   3'- -UCGuaUCGGaGCCGG--------------UCGCAUCU--------CCG- -5'
6492 5' -57.4 NC_001847.1 + 17316 0.67 0.76792
Target:  5'- cGGCGcGGCacaCGGCC-GCGUAGccGGCg -3'
miRNA:   3'- -UCGUaUCGga-GCCGGuCGCAUCu-CCG- -5'
6492 5' -57.4 NC_001847.1 + 4261 0.67 0.76792
Target:  5'- cAGC--AGCCagUCGGCUuuGGCGgccacGAGGCg -3'
miRNA:   3'- -UCGuaUCGG--AGCCGG--UCGCau---CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 102709 0.67 0.76792
Target:  5'- cGGCAgcGCCUgGGCCaccgccccgaaaAGCGgcUGGAcGGCc -3'
miRNA:   3'- -UCGUauCGGAgCCGG------------UCGC--AUCU-CCG- -5'
6492 5' -57.4 NC_001847.1 + 95815 0.67 0.76792
Target:  5'- uGCuUGGaCC-CGGCuCGGCGgcAGGGGCa -3'
miRNA:   3'- uCGuAUC-GGaGCCG-GUCGCa-UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 58269 0.67 0.76792
Target:  5'- aGGCA-GGCCuccaugugcUCGGCC-GCGgcGAcGGCg -3'
miRNA:   3'- -UCGUaUCGG---------AGCCGGuCGCauCU-CCG- -5'
6492 5' -57.4 NC_001847.1 + 54421 0.67 0.765063
Target:  5'- cGguUGGCCUCGGC-GGCccgggcagagacgagGGGGGCg -3'
miRNA:   3'- uCguAUCGGAGCCGgUCGca-------------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 3812 0.67 0.758354
Target:  5'- cGGCAcggGGCgUCGGCCgcgAGCGU---GGCg -3'
miRNA:   3'- -UCGUa--UCGgAGCCGG---UCGCAucuCCG- -5'
6492 5' -57.4 NC_001847.1 + 35990 0.67 0.758354
Target:  5'- cGCGcAGCCgcgcugcaggCGGCCgcgGGCGUGGugcugGGGCu -3'
miRNA:   3'- uCGUaUCGGa---------GCCGG---UCGCAUC-----UCCG- -5'
6492 5' -57.4 NC_001847.1 + 3527 0.67 0.758354
Target:  5'- gGGcCGUGGCCgacuaCGGCCgcgAGCGcGGcGGCg -3'
miRNA:   3'- -UC-GUAUCGGa----GCCGG---UCGCaUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 124434 0.67 0.758354
Target:  5'- uGGC--GGCgCUUGGCCGGCGcGGgccgcgcccGGGCg -3'
miRNA:   3'- -UCGuaUCG-GAGCCGGUCGCaUC---------UCCG- -5'
6492 5' -57.4 NC_001847.1 + 16679 0.67 0.758354
Target:  5'- cGCGcAGCCUUGGCUgcgcgGGCGagccGGcAGGCg -3'
miRNA:   3'- uCGUaUCGGAGCCGG-----UCGCa---UC-UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.