miRNA display CGI


Results 101 - 120 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 16679 0.67 0.758354
Target:  5'- cGCGcAGCCUUGGCUgcgcgGGCGagccGGcAGGCg -3'
miRNA:   3'- uCGUaUCGGAGCCGG-----UCGCa---UC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 19845 0.67 0.758354
Target:  5'- cAGCGc--CCUUGGCCcGCGcccGGGGGCg -3'
miRNA:   3'- -UCGUaucGGAGCCGGuCGCa--UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 21621 0.67 0.758354
Target:  5'- uGGC--GGCgCUUGGCCGGCGcGGgccgcgcccGGGCg -3'
miRNA:   3'- -UCGuaUCG-GAGCCGGUCGCaUC---------UCCG- -5'
6492 5' -57.4 NC_001847.1 + 92719 0.67 0.757391
Target:  5'- uGGCAgAGCCUCGcgugcucGCgCAgcGCGUGGcAGGCc -3'
miRNA:   3'- -UCGUaUCGGAGC-------CG-GU--CGCAUC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 22090 0.67 0.748674
Target:  5'- aAGCG-GGCC-CGGCaGGCGcgccGGGGGCg -3'
miRNA:   3'- -UCGUaUCGGaGCCGgUCGCa---UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 30485 0.67 0.748674
Target:  5'- cGCAc-GCCUgGGCCGgGCGcUGGAcgGGCg -3'
miRNA:   3'- uCGUauCGGAgCCGGU-CGC-AUCU--CCG- -5'
6492 5' -57.4 NC_001847.1 + 56221 0.67 0.748674
Target:  5'- cAGCAgGGCUUCGuCCAucuGCacgagGUAGAGGCg -3'
miRNA:   3'- -UCGUaUCGGAGCcGGU---CG-----CAUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 57956 0.67 0.748674
Target:  5'- gGGCAgcAGCg-CGGUCgcGGCGUcgGGAGGCa -3'
miRNA:   3'- -UCGUa-UCGgaGCCGG--UCGCA--UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 92985 0.67 0.748674
Target:  5'- cGGCGUgcAGCCacacGCgAGCGcUGGAGGCg -3'
miRNA:   3'- -UCGUA--UCGGagc-CGgUCGC-AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 2182 0.67 0.748674
Target:  5'- cGCGccGCCUgGG-CGGCGUGcGGGCg -3'
miRNA:   3'- uCGUauCGGAgCCgGUCGCAUcUCCG- -5'
6492 5' -57.4 NC_001847.1 + 106081 0.67 0.748674
Target:  5'- cGCcgGcGCCgcgCGGCCGGCG-AGcacGGCg -3'
miRNA:   3'- uCGuaU-CGGa--GCCGGUCGCaUCu--CCG- -5'
6492 5' -57.4 NC_001847.1 + 46428 0.67 0.748674
Target:  5'- cAGCAcAGCCUCcucgGGCgCGGCgGUGGGGauGCg -3'
miRNA:   3'- -UCGUaUCGGAG----CCG-GUCG-CAUCUC--CG- -5'
6492 5' -57.4 NC_001847.1 + 2391 0.67 0.748674
Target:  5'- cGCcgGcGCCUCGGCCcagAGuCGUccucccccgAGGGGCc -3'
miRNA:   3'- uCGuaU-CGGAGCCGG---UC-GCA---------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 14371 0.67 0.748674
Target:  5'- cGCAgauGCCaCGGCCgcGGCcGUGGuGGCc -3'
miRNA:   3'- uCGUau-CGGaGCCGG--UCG-CAUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 105204 0.67 0.748674
Target:  5'- cGCcgGcGCCUCGGCCcagAGuCGUccucccccgAGGGGCc -3'
miRNA:   3'- uCGuaU-CGGAGCCGG---UC-GCA---------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 3268 0.67 0.748674
Target:  5'- cGCcgGcGCCgcgCGGCCGGCG-AGcacGGCg -3'
miRNA:   3'- uCGuaU-CGGa--GCCGGUCGCaUCu--CCG- -5'
6492 5' -57.4 NC_001847.1 + 124903 0.67 0.748674
Target:  5'- aAGCG-GGCC-CGGCaGGCGcgccGGGGGCg -3'
miRNA:   3'- -UCGUaUCGGaGCCGgUCGCa---UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 133298 0.67 0.748674
Target:  5'- cGCAc-GCCUgGGCCGgGCGcUGGAcgGGCg -3'
miRNA:   3'- uCGUauCGGAgCCGGU-CGC-AUCU--CCG- -5'
6492 5' -57.4 NC_001847.1 + 33504 0.67 0.748674
Target:  5'- cGGCGcgGGCggCGGCgGGCGccgccgcGGAGGCg -3'
miRNA:   3'- -UCGUa-UCGgaGCCGgUCGCa------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 134472 0.67 0.7477
Target:  5'- uGGCAUAGgCgCGGCCAacgaagugcacggGUGUAGuguGGGCc -3'
miRNA:   3'- -UCGUAUCgGaGCCGGU-------------CGCAUC---UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.