miRNA display CGI


Results 61 - 80 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 19263 0.68 0.668284
Target:  5'- cGGCGcgAGCCggCGGCgCAGCGUcuguGcGGCg -3'
miRNA:   3'- -UCGUa-UCGGa-GCCG-GUCGCAu---CuCCG- -5'
6492 5' -57.4 NC_001847.1 + 19845 0.67 0.758354
Target:  5'- cAGCGc--CCUUGGCCcGCGcccGGGGGCg -3'
miRNA:   3'- -UCGUaucGGAGCCGGuCGCa--UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 21621 0.67 0.758354
Target:  5'- uGGC--GGCgCUUGGCCGGCGcGGgccgcgcccGGGCg -3'
miRNA:   3'- -UCGuaUCG-GAGCCGGUCGCaUC---------UCCG- -5'
6492 5' -57.4 NC_001847.1 + 21731 0.68 0.719049
Target:  5'- gGGCGcgGGCCggcgcCGGCCcGCGcgcgcggGGGGGCc -3'
miRNA:   3'- -UCGUa-UCGGa----GCCGGuCGCa------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 22090 0.67 0.748674
Target:  5'- aAGCG-GGCC-CGGCaGGCGcgccGGGGGCg -3'
miRNA:   3'- -UCGUaUCGGaGCCGgUCGCa---UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 22392 0.73 0.430471
Target:  5'- aGGCGcccgGGCCgCGGCgAGCGUgcucguccgcGGGGGCg -3'
miRNA:   3'- -UCGUa---UCGGaGCCGgUCGCA----------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 22904 0.69 0.637394
Target:  5'- gAGCAUGGCugggCUgGGCUGGgGUGGgcuGGGCu -3'
miRNA:   3'- -UCGUAUCG----GAgCCGGUCgCAUC---UCCG- -5'
6492 5' -57.4 NC_001847.1 + 23464 0.67 0.736922
Target:  5'- cGCGUccgccGCCUCGGCCAucgcgcucggcgcGCGUcgcuacaGGuGGCa -3'
miRNA:   3'- uCGUAu----CGGAGCCGGU-------------CGCA-------UCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 24389 0.66 0.78575
Target:  5'- uAGCGUugacaaaaauggcGGCCguggCGGCCGcCGUGGAcagagcGGCa -3'
miRNA:   3'- -UCGUA-------------UCGGa---GCCGGUcGCAUCU------CCG- -5'
6492 5' -57.4 NC_001847.1 + 24743 0.66 0.786675
Target:  5'- aGGCcgGGCCgugCaGCCGGCu--GAGGUg -3'
miRNA:   3'- -UCGuaUCGGa--GcCGGUCGcauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 26068 0.66 0.808429
Target:  5'- aGGCAaccugGGCC-CGGCagcagagauauuuaaCGGCGguuugAGGGGCg -3'
miRNA:   3'- -UCGUa----UCGGaGCCG---------------GUCGCa----UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 26906 0.68 0.70901
Target:  5'- -uCAUGGCCUgcaGGCaGGCGUAGAaGCg -3'
miRNA:   3'- ucGUAUCGGAg--CCGgUCGCAUCUcCG- -5'
6492 5' -57.4 NC_001847.1 + 27155 0.7 0.56553
Target:  5'- gGGCGcAGCCgcggCGGCCAGCccaauaaugucGgcGGGGUg -3'
miRNA:   3'- -UCGUaUCGGa---GCCGGUCG-----------CauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 27499 0.75 0.309018
Target:  5'- cGGCAgaGGCCUCGGCCGccgccGCGgcGGcGGCg -3'
miRNA:   3'- -UCGUa-UCGGAGCCGGU-----CGCauCU-CCG- -5'
6492 5' -57.4 NC_001847.1 + 27734 0.66 0.795845
Target:  5'- cGGCGgaAGCCgcggCGGCgGuuGCGgcgGGGGGCu -3'
miRNA:   3'- -UCGUa-UCGGa---GCCGgU--CGCa--UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 27982 0.75 0.323597
Target:  5'- aGGC--GGCCgCGGCCGGgGcGGAGGCg -3'
miRNA:   3'- -UCGuaUCGGaGCCGGUCgCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 28851 0.66 0.82242
Target:  5'- cGCGcGGCCgcgCGcgcgacGCCGGCGgcgcuGGGGCg -3'
miRNA:   3'- uCGUaUCGGa--GC------CGGUCGCau---CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 28992 0.69 0.616766
Target:  5'- -cCAUGGCCUacccggaGGCCGGCGccGGcGGCa -3'
miRNA:   3'- ucGUAUCGGAg------CCGGUCGCa-UCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 29246 0.7 0.58593
Target:  5'- uGCAUGGCCccgCGGCCGcGCacggacuacGUGGcGGCg -3'
miRNA:   3'- uCGUAUCGGa--GCCGGU-CG---------CAUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 29376 0.7 0.58593
Target:  5'- uGCGc-GCCgaggCGGCCGccGCGcUGGAGGCg -3'
miRNA:   3'- uCGUauCGGa---GCCGGU--CGC-AUCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.