miRNA display CGI


Results 81 - 100 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 29446 0.68 0.719049
Target:  5'- gGGCGUGgcGCCgcccgCGGCCGaagcgccgcccGCGgccGAGGCg -3'
miRNA:   3'- -UCGUAU--CGGa----GCCGGU-----------CGCau-CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 29509 0.68 0.675462
Target:  5'- gGGCGgcGCUUCGGCCGcagagcucgcccgcGCGgcGcGGGCg -3'
miRNA:   3'- -UCGUauCGGAGCCGGU--------------CGCauC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 29526 0.67 0.729012
Target:  5'- cGGCGcGGCUggCGGCCGcgcucGCGgcccUGGAGGCc -3'
miRNA:   3'- -UCGUaUCGGa-GCCGGU-----CGC----AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 29595 0.72 0.439516
Target:  5'- cGCcgGGCCgggGGCCGGUggaaGUGGAGGUg -3'
miRNA:   3'- uCGuaUCGGag-CCGGUCG----CAUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 29728 0.67 0.777363
Target:  5'- cGCGggAGCggUGGCCAaCGUAGAcGGCu -3'
miRNA:   3'- uCGUa-UCGgaGCCGGUcGCAUCU-CCG- -5'
6492 5' -57.4 NC_001847.1 + 29895 0.66 0.830937
Target:  5'- aGGCGgcGGCCcugcCGGCCGccGCG-GGGGGCc -3'
miRNA:   3'- -UCGUa-UCGGa---GCCGGU--CGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 30420 0.72 0.486292
Target:  5'- cGGCA-AGCUcgUGGCgGGCGcGGAGGCg -3'
miRNA:   3'- -UCGUaUCGGa-GCCGgUCGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 30485 0.67 0.748674
Target:  5'- cGCAc-GCCUgGGCCGgGCGcUGGAcgGGCg -3'
miRNA:   3'- uCGUauCGGAgCCGGU-CGC-AUCU--CCG- -5'
6492 5' -57.4 NC_001847.1 + 30625 0.68 0.70901
Target:  5'- cGCAgcGCCgcaaacgcggCGGCCGcCGaAGAGGCg -3'
miRNA:   3'- uCGUauCGGa---------GCCGGUcGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 30734 0.69 0.616766
Target:  5'- cGGaCGUGGCCgacugGGCgGGCGUAGAccgcGGCc -3'
miRNA:   3'- -UC-GUAUCGGag---CCGgUCGCAUCU----CCG- -5'
6492 5' -57.4 NC_001847.1 + 30807 0.67 0.777363
Target:  5'- cGCGUcuGCCgccgCGGCaaacaCGGCGgcGGGGCc -3'
miRNA:   3'- uCGUAu-CGGa---GCCG-----GUCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 31082 0.68 0.719049
Target:  5'- cGGCGc-GCCgcugCGGCCGGUGUAccuGGCc -3'
miRNA:   3'- -UCGUauCGGa---GCCGGUCGCAUcu-CCG- -5'
6492 5' -57.4 NC_001847.1 + 31159 0.67 0.781105
Target:  5'- cGGCgGUGGCCUucugcgCGGCCGcgcugccggagccgcGCGccGAGGCg -3'
miRNA:   3'- -UCG-UAUCGGA------GCCGGU---------------CGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 31426 0.66 0.813726
Target:  5'- cGGCG-GGCggCGGCCGGCGgccGcGGCg -3'
miRNA:   3'- -UCGUaUCGgaGCCGGUCGCau-CuCCG- -5'
6492 5' -57.4 NC_001847.1 + 31458 0.72 0.476742
Target:  5'- cGGCGcgGGCCgccGCCGcGCGUGGAGGUg -3'
miRNA:   3'- -UCGUa-UCGGagcCGGU-CGCAUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 31693 0.72 0.439516
Target:  5'- uGUcgGGCCUCGGg-GGCGgggGGAGGCg -3'
miRNA:   3'- uCGuaUCGGAGCCggUCGCa--UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 31805 0.68 0.668284
Target:  5'- cGGcCGUGGCggUGGgCGGCGcGGGGGCa -3'
miRNA:   3'- -UC-GUAUCGgaGCCgGUCGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 32322 0.71 0.535301
Target:  5'- cGCAgggGGCCcgcgCGGCgCGGCGcGGAGGg -3'
miRNA:   3'- uCGUa--UCGGa---GCCG-GUCGCaUCUCCg -5'
6492 5' -57.4 NC_001847.1 + 32380 0.71 0.545319
Target:  5'- cGGCGUcgcgGGCgUCGcGCCuuGCGUGGGGGg -3'
miRNA:   3'- -UCGUA----UCGgAGC-CGGu-CGCAUCUCCg -5'
6492 5' -57.4 NC_001847.1 + 32669 0.66 0.813726
Target:  5'- uGCcUGGCCugcaUCcGCCGGUGgcuggAGGGGCg -3'
miRNA:   3'- uCGuAUCGG----AGcCGGUCGCa----UCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.