miRNA display CGI


Results 101 - 120 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 32727 0.68 0.706994
Target:  5'- gAGCGccucucGGCCUcCGGCCGGCGgcuauuuucgcgGGcGGCg -3'
miRNA:   3'- -UCGUa-----UCGGA-GCCGGUCGCa-----------UCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 32887 0.74 0.362254
Target:  5'- cGGCGaGGCCUCgggGGCCGGCGgggaagccGGGGCc -3'
miRNA:   3'- -UCGUaUCGGAG---CCGGUCGCau------CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 32923 0.66 0.786675
Target:  5'- cGCGgacgGGaggaGGCCGGCGgcGGGGCc -3'
miRNA:   3'- uCGUa---UCggagCCGGUCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 32994 0.7 0.57571
Target:  5'- gGGCAgggcGGCCggagCGGCCGGgGggcgcgcGGGGCg -3'
miRNA:   3'- -UCGUa---UCGGa---GCCGGUCgCau-----CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 33504 0.67 0.748674
Target:  5'- cGGCGcgGGCggCGGCgGGCGccgccgcGGAGGCg -3'
miRNA:   3'- -UCGUa-UCGgaGCCGgUCGCa------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 33662 0.81 0.139876
Target:  5'- cGCGUGGCCgCGGCCcGCGcggggcUAGAGGCg -3'
miRNA:   3'- uCGUAUCGGaGCCGGuCGC------AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 33926 0.69 0.616766
Target:  5'- uGGC--AGCCuUCGGCCGGUaccgcGAGGCg -3'
miRNA:   3'- -UCGuaUCGG-AGCCGGUCGcau--CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 34040 0.66 0.804865
Target:  5'- aGGCGaugGGCCccgCGGCgCGcGCGUuuuucgAGGGGCa -3'
miRNA:   3'- -UCGUa--UCGGa--GCCG-GU-CGCA------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 34137 0.69 0.647706
Target:  5'- cGCgGUGGCCgccgCGGCgAGCGcgcugcgcGAGGCg -3'
miRNA:   3'- uCG-UAUCGGa---GCCGgUCGCau------CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 34235 0.66 0.830937
Target:  5'- uGCA-GGCCcaguacgCGGCgCGGCGc-GAGGCg -3'
miRNA:   3'- uCGUaUCGGa------GCCG-GUCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 34391 0.68 0.668284
Target:  5'- cGGCGgccGCCgccgCGGCagacgCGGCGcUGGGGGCg -3'
miRNA:   3'- -UCGUau-CGGa---GCCG-----GUCGC-AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 34817 0.68 0.719049
Target:  5'- uGGCGcGGCa--GGCCgaccgGGCGcUGGAGGCg -3'
miRNA:   3'- -UCGUaUCGgagCCGG-----UCGC-AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 34905 0.66 0.795845
Target:  5'- uGGCGcuuuggGGUCUC-GCCAGCG-AGAGaGCu -3'
miRNA:   3'- -UCGUa-----UCGGAGcCGGUCGCaUCUC-CG- -5'
6492 5' -57.4 NC_001847.1 + 34955 0.71 0.535301
Target:  5'- uGGCcuauacuuUAGCCggcCGGCCAgGCGgccAGGGGCa -3'
miRNA:   3'- -UCGu-------AUCGGa--GCCGGU-CGCa--UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 35454 0.67 0.729012
Target:  5'- cGCGacgcGGCCgCGGCgcgagaGGCGcUAGAGGCg -3'
miRNA:   3'- uCGUa---UCGGaGCCGg-----UCGC-AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 35629 0.68 0.688742
Target:  5'- cGGCGgcGCUggGGCCAGCGcUGGAccgcgccgccucGGCg -3'
miRNA:   3'- -UCGUauCGGagCCGGUCGC-AUCU------------CCG- -5'
6492 5' -57.4 NC_001847.1 + 35827 0.66 0.795845
Target:  5'- uAGCuucGGCCccCGGCgGGCGgcGAugGGCg -3'
miRNA:   3'- -UCGua-UCGGa-GCCGgUCGCauCU--CCG- -5'
6492 5' -57.4 NC_001847.1 + 35883 0.68 0.70901
Target:  5'- cGGCAgcuggAGUCggCGGCggCGGCGUGGGacGGCg -3'
miRNA:   3'- -UCGUa----UCGGa-GCCG--GUCGCAUCU--CCG- -5'
6492 5' -57.4 NC_001847.1 + 35990 0.67 0.758354
Target:  5'- cGCGcAGCCgcgcugcaggCGGCCgcgGGCGUGGugcugGGGCu -3'
miRNA:   3'- uCGUaUCGGa---------GCCGG---UCGCAUC-----UCCG- -5'
6492 5' -57.4 NC_001847.1 + 36955 0.72 0.44867
Target:  5'- gAGCGggGGCUgCGGCCAGCGc--GGGCg -3'
miRNA:   3'- -UCGUa-UCGGaGCCGGUCGCaucUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.