miRNA display CGI


Results 121 - 140 of 300 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 37169 0.66 0.82242
Target:  5'- uGGCGgucaacAGCCUCGcGCCGGgagagcccgGUGcGAGGCg -3'
miRNA:   3'- -UCGUa-----UCGGAGC-CGGUCg--------CAU-CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 37475 0.67 0.73889
Target:  5'- uGGCcgGGCC-CGGCCuggcAGCGgcgGGucuGGGCc -3'
miRNA:   3'- -UCGuaUCGGaGCCGG----UCGCa--UC---UCCG- -5'
6492 5' -57.4 NC_001847.1 + 37577 0.72 0.457927
Target:  5'- cGGCGcUGGCCgcugCGGCUgcGGCGgccGGGGGCc -3'
miRNA:   3'- -UCGU-AUCGGa---GCCGG--UCGCa--UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 37965 0.66 0.82242
Target:  5'- uAGcCAUGGCCcgcgugCGcGCCGGCaGUgucuuuggGGAGGCc -3'
miRNA:   3'- -UC-GUAUCGGa-----GC-CGGUCG-CA--------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 38965 0.7 0.555398
Target:  5'- cGcCAUGGCggCGGCC-GCGgcGGGGCu -3'
miRNA:   3'- uC-GUAUCGgaGCCGGuCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 39758 0.67 0.777363
Target:  5'- cGGCGccGGCCUCaGaGCCGGCGgcGcGGUc -3'
miRNA:   3'- -UCGUa-UCGGAG-C-CGGUCGCauCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 40329 0.73 0.404005
Target:  5'- aAGCGgcugcGGcCCUCGGCgAccuugaggugcGCGUGGAGGCg -3'
miRNA:   3'- -UCGUa----UC-GGAGCCGgU-----------CGCAUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 40952 0.68 0.698905
Target:  5'- cGCAgcGCCUCGaacuGCCcGCGc-GAGGCg -3'
miRNA:   3'- uCGUauCGGAGC----CGGuCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 42018 0.68 0.698905
Target:  5'- cGGC--AGCC-CGGCCAGCuucgcccgguacGUAGAcuGGCu -3'
miRNA:   3'- -UCGuaUCGGaGCCGGUCG------------CAUCU--CCG- -5'
6492 5' -57.4 NC_001847.1 + 42085 0.66 0.786675
Target:  5'- cGCAUcGGCCUCGcgguGCCGGCaccGUccaggcgccGGGGGCc -3'
miRNA:   3'- uCGUA-UCGGAGC----CGGUCG---CA---------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 42723 0.69 0.647706
Target:  5'- uGGCGcGGCgggCGGCCgcgcgGGCGgcGGGGCg -3'
miRNA:   3'- -UCGUaUCGga-GCCGG-----UCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 42933 0.67 0.777363
Target:  5'- uGC-UGGCCgcccaagCGGCCGacgccgcgcGCGggGGGGGCg -3'
miRNA:   3'- uCGuAUCGGa------GCCGGU---------CGCa-UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 43070 0.66 0.804865
Target:  5'- cGGCAacgcgGGCgCUgcUGGCuCGGCGgcGGAGGCg -3'
miRNA:   3'- -UCGUa----UCG-GA--GCCG-GUCGCa-UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 43236 0.66 0.786675
Target:  5'- uGGCGgugggGGCgCgcgggCGGCgCGGCGcccgGGGGGCa -3'
miRNA:   3'- -UCGUa----UCG-Ga----GCCG-GUCGCa---UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 44242 0.66 0.786675
Target:  5'- gGGCGUggGGCUgagCGcGCCGGCGacuGGGCa -3'
miRNA:   3'- -UCGUA--UCGGa--GC-CGGUCGCaucUCCG- -5'
6492 5' -57.4 NC_001847.1 + 45288 0.66 0.82242
Target:  5'- cGGCGagccGGCCUUGcaGCCGGCGgucGcAGGCg -3'
miRNA:   3'- -UCGUa---UCGGAGC--CGGUCGCau-C-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 45855 0.66 0.830937
Target:  5'- cGGCcgaGGCCUCGGCC-GCGgcGc-GCg -3'
miRNA:   3'- -UCGua-UCGGAGCCGGuCGCauCucCG- -5'
6492 5' -57.4 NC_001847.1 + 46428 0.67 0.748674
Target:  5'- cAGCAcAGCCUCcucgGGCgCGGCgGUGGGGauGCg -3'
miRNA:   3'- -UCGUaUCGGAG----CCG-GUCG-CAUCUC--CG- -5'
6492 5' -57.4 NC_001847.1 + 46498 0.78 0.220901
Target:  5'- cAGCGUGGCCgagCGuuGCCAGCGgcagcgcucgGGGGGCg -3'
miRNA:   3'- -UCGUAUCGGa--GC--CGGUCGCa---------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 46913 0.72 0.44867
Target:  5'- cGCGccGGCCUCGGCUc-CGgcGAGGCg -3'
miRNA:   3'- uCGUa-UCGGAGCCGGucGCauCUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.