miRNA display CGI


Results 41 - 60 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 111293 0.75 0.323597
Target:  5'- gGGC--GGCgCUCGGCCGGgGgcGGGGCc -3'
miRNA:   3'- -UCGuaUCG-GAGCCGGUCgCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 108619 0.66 0.795845
Target:  5'- aAGCAUGGCCgaacgccccCGGCCccGCGcccGGcAGGCc -3'
miRNA:   3'- -UCGUAUCGGa--------GCCGGu-CGCa--UC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 108022 0.66 0.786675
Target:  5'- cGGCucucucGCCgcggCGGCCGGCG---GGGCg -3'
miRNA:   3'- -UCGuau---CGGa---GCCGGUCGCaucUCCG- -5'
6492 5' -57.4 NC_001847.1 + 106892 0.72 0.486292
Target:  5'- cAGCcucGGCCUCGGCCucAGCGUc--GGCg -3'
miRNA:   3'- -UCGua-UCGGAGCCGG--UCGCAucuCCG- -5'
6492 5' -57.4 NC_001847.1 + 106540 0.68 0.70901
Target:  5'- cGCGUAGCgCgCGGCCGccucGCGgaucucGGGGCa -3'
miRNA:   3'- uCGUAUCG-GaGCCGGU----CGCau----CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 106183 0.71 0.525347
Target:  5'- cGGCGUAaaccccGCCgCGGCCAGCGUcuccacggcuuGGucuGGCg -3'
miRNA:   3'- -UCGUAU------CGGaGCCGGUCGCA-----------UCu--CCG- -5'
6492 5' -57.4 NC_001847.1 + 106081 0.67 0.748674
Target:  5'- cGCcgGcGCCgcgCGGCCGGCG-AGcacGGCg -3'
miRNA:   3'- uCGuaU-CGGa--GCCGGUCGCaUCu--CCG- -5'
6492 5' -57.4 NC_001847.1 + 105772 0.71 0.525347
Target:  5'- cGGCGgccGCCUCGGCggCAGCGccgccGGGGCc -3'
miRNA:   3'- -UCGUau-CGGAGCCG--GUCGCau---CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 105669 0.74 0.37036
Target:  5'- gAGCGUGccGCCUCGGCC-GCG-GGcGGCg -3'
miRNA:   3'- -UCGUAU--CGGAGCCGGuCGCaUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 105204 0.67 0.748674
Target:  5'- cGCcgGcGCCUCGGCCcagAGuCGUccucccccgAGGGGCc -3'
miRNA:   3'- uCGuaU-CGGAGCCGG---UC-GCA---------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 105090 0.66 0.82242
Target:  5'- cGGCGgaAGCCgccGUCGGCGgcGGGGCc -3'
miRNA:   3'- -UCGUa-UCGGagcCGGUCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 104919 0.72 0.44867
Target:  5'- cGGCGgcgGGCCgcgaucUCGGCCAGCGccucGGGGUc -3'
miRNA:   3'- -UCGUa--UCGG------AGCCGGUCGCau--CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 104483 0.67 0.729012
Target:  5'- cGGCcgGGCCgucgcgCGGCCAGUucucGGGGUc -3'
miRNA:   3'- -UCGuaUCGGa-----GCCGGUCGcau-CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 104307 0.71 0.534302
Target:  5'- cGGCGgcGCCUCGggguagaGCCGcGCGUAGGcGGCc -3'
miRNA:   3'- -UCGUauCGGAGC-------CGGU-CGCAUCU-CCG- -5'
6492 5' -57.4 NC_001847.1 + 103953 0.66 0.813726
Target:  5'- cGGCGgcGCCUCGGCgcgcggcuccggCAGCGcGGccGCg -3'
miRNA:   3'- -UCGUauCGGAGCCG------------GUCGCaUCucCG- -5'
6492 5' -57.4 NC_001847.1 + 103689 0.66 0.830937
Target:  5'- cGCGcGGCggCGGCCcGCGccGGGGCc -3'
miRNA:   3'- uCGUaUCGgaGCCGGuCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 103045 0.68 0.688742
Target:  5'- gAGCccgGGCCUCGcGCCccgacgcccGGCGcccAGGGGCc -3'
miRNA:   3'- -UCGua-UCGGAGC-CGG---------UCGCa--UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 102952 0.7 0.606465
Target:  5'- cGCG-GGCCUCGGgccCCGGCcgGGGGGCc -3'
miRNA:   3'- uCGUaUCGGAGCC---GGUCGcaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 102709 0.67 0.76792
Target:  5'- cGGCAgcGCCUgGGCCaccgccccgaaaAGCGgcUGGAcGGCc -3'
miRNA:   3'- -UCGUauCGGAgCCGG------------UCGC--AUCU-CCG- -5'
6492 5' -57.4 NC_001847.1 + 102404 0.7 0.57571
Target:  5'- cGCGaaaaUAGCCgcCGGCCGGaGgccgAGAGGCg -3'
miRNA:   3'- uCGU----AUCGGa-GCCGGUCgCa---UCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.