miRNA display CGI


Results 61 - 80 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 102092 0.72 0.439516
Target:  5'- cGCAgcGCCUCGGCCGcgagcGCGUccagcucggcggAGAGGg -3'
miRNA:   3'- uCGUauCGGAGCCGGU-----CGCA------------UCUCCg -5'
6492 5' -57.4 NC_001847.1 + 101163 0.7 0.555398
Target:  5'- gGGCccAGCC-CGGCCAGCGcgcccGGCg -3'
miRNA:   3'- -UCGuaUCGGaGCCGGUCGCaucu-CCG- -5'
6492 5' -57.4 NC_001847.1 + 101159 0.72 0.439516
Target:  5'- gGGCcggGGCCggGGCCGGgGUcGGGGCg -3'
miRNA:   3'- -UCGua-UCGGagCCGGUCgCAuCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 101082 0.66 0.804865
Target:  5'- cGCGggGGCCg-GGUCGGCGgGGcGGGCg -3'
miRNA:   3'- uCGUa-UCGGagCCGGUCGCaUC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 100883 0.68 0.678532
Target:  5'- cGGCAggGGCg-CGGCCGGCGggagacGGGGUc -3'
miRNA:   3'- -UCGUa-UCGgaGCCGGUCGCau----CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 100388 0.66 0.813726
Target:  5'- cGCGcAGCCgcgccagcUCGGCC-GCGUcGaAGGCg -3'
miRNA:   3'- uCGUaUCGG--------AGCCGGuCGCAuC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 99763 0.73 0.395414
Target:  5'- cGGCAgugAGCCgccgCGGCUuugGGCG-GGGGGCa -3'
miRNA:   3'- -UCGUa--UCGGa---GCCGG---UCGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 98955 0.69 0.616766
Target:  5'- cAGCG-AGCCcaCGcGCCacGGCGUAGGGGUu -3'
miRNA:   3'- -UCGUaUCGGa-GC-CGG--UCGCAUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 98818 0.67 0.729012
Target:  5'- cGGCAcgAGCUUaaaguaGGCUu-CGUAGAGGCg -3'
miRNA:   3'- -UCGUa-UCGGAg-----CCGGucGCAUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 98736 0.69 0.658006
Target:  5'- aAGCcggGGCCggGGCCGGgGccGGGGCa -3'
miRNA:   3'- -UCGua-UCGGagCCGGUCgCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 98285 0.66 0.82242
Target:  5'- cGCGUAGagCUCGGCCGcCGccGAGcGCa -3'
miRNA:   3'- uCGUAUCg-GAGCCGGUcGCauCUC-CG- -5'
6492 5' -57.4 NC_001847.1 + 98190 0.7 0.56553
Target:  5'- cGCGcUGGCCgcagcccccgcUCGGCCAGCG-AGAaGCa -3'
miRNA:   3'- uCGU-AUCGG-----------AGCCGGUCGCaUCUcCG- -5'
6492 5' -57.4 NC_001847.1 + 97908 0.68 0.719049
Target:  5'- cGCGuUGGCCUCGGCaaaguGCGUgcAGugaacgaaGGGCg -3'
miRNA:   3'- uCGU-AUCGGAGCCGgu---CGCA--UC--------UCCG- -5'
6492 5' -57.4 NC_001847.1 + 97530 0.71 0.515465
Target:  5'- cGCuAUGGUguaCUUGGCCAGCGUGcgcuuGAGGUc -3'
miRNA:   3'- uCG-UAUCG---GAGCCGGUCGCAU-----CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 96936 0.66 0.82242
Target:  5'- cGGCccgGGCCUCcGCgGGCGgc-AGGCg -3'
miRNA:   3'- -UCGua-UCGGAGcCGgUCGCaucUCCG- -5'
6492 5' -57.4 NC_001847.1 + 96905 0.73 0.421535
Target:  5'- cGCGcgGGaCUggCGGCC-GCGUAGAGGCg -3'
miRNA:   3'- uCGUa-UC-GGa-GCCGGuCGCAUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 96421 0.7 0.590028
Target:  5'- uGGCGgGGCCggCGGCaGGCGcggccccggaggcacUGGAGGCg -3'
miRNA:   3'- -UCGUaUCGGa-GCCGgUCGC---------------AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 96243 0.66 0.804865
Target:  5'- gGGCcggAGUCagGGCCGGCGgcGGcaauGGCg -3'
miRNA:   3'- -UCGua-UCGGagCCGGUCGCauCU----CCG- -5'
6492 5' -57.4 NC_001847.1 + 95815 0.67 0.76792
Target:  5'- uGCuUGGaCC-CGGCuCGGCGgcAGGGGCa -3'
miRNA:   3'- uCGuAUC-GGaGCCG-GUCGCa-UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 94180 0.68 0.70901
Target:  5'- cGCGgccGCCUCGcGCgGGCaGUucGAGGCg -3'
miRNA:   3'- uCGUau-CGGAGC-CGgUCG-CAu-CUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.