miRNA display CGI


Results 81 - 100 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 92985 0.67 0.748674
Target:  5'- cGGCGUgcAGCCacacGCgAGCGcUGGAGGCg -3'
miRNA:   3'- -UCGUA--UCGGagc-CGgUCGC-AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 92719 0.67 0.757391
Target:  5'- uGGCAgAGCCUCGcgugcucGCgCAgcGCGUGGcAGGCc -3'
miRNA:   3'- -UCGUaUCGGAGC-------CG-GU--CGCAUC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 92464 0.71 0.505658
Target:  5'- cGCAgGGCCggucgaUGGCCAGCGcGGcGGCg -3'
miRNA:   3'- uCGUaUCGGa-----GCCGGUCGCaUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 92387 0.7 0.58593
Target:  5'- gAGCAUGGCguagUCGGCCAcCcagGGGGGCg -3'
miRNA:   3'- -UCGUAUCGg---AGCCGGUcGca-UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 91563 0.68 0.719049
Target:  5'- cAGCGUAaguccgucguacGCCUCGGCCAuccucGCGgcGcucgcGGCg -3'
miRNA:   3'- -UCGUAU------------CGGAGCCGGU-----CGCauCu----CCG- -5'
6492 5' -57.4 NC_001847.1 + 90921 0.68 0.70901
Target:  5'- uAGCAgcAGCCg-GGCgaCGGCGUAGugGGGCa -3'
miRNA:   3'- -UCGUa-UCGGagCCG--GUCGCAUC--UCCG- -5'
6492 5' -57.4 NC_001847.1 + 90849 0.69 0.647706
Target:  5'- gAGCGgcgccccggGGCCggGGCUGGUGUcGAGGCc -3'
miRNA:   3'- -UCGUa--------UCGGagCCGGUCGCAuCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 90748 0.69 0.616766
Target:  5'- cGCGUGGCCg-GGCCccgggagcgggAGCGcccuuGAGGCg -3'
miRNA:   3'- uCGUAUCGGagCCGG-----------UCGCau---CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 89764 0.69 0.637394
Target:  5'- cGGCAcguGCa-CGcGCCGGCGUAcGAGGCc -3'
miRNA:   3'- -UCGUau-CGgaGC-CGGUCGCAU-CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 89296 0.7 0.555398
Target:  5'- cGGCcgaGGCCUCGGCCgugccgcccAGCG-AGuGGCc -3'
miRNA:   3'- -UCGua-UCGGAGCCGG---------UCGCaUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 88840 0.66 0.795845
Target:  5'- cGCucGGCgCUaCGGCUGGcCGUAGAGGa -3'
miRNA:   3'- uCGuaUCG-GA-GCCGGUC-GCAUCUCCg -5'
6492 5' -57.4 NC_001847.1 + 88290 0.66 0.786675
Target:  5'- uGCAcUGGCCUUGcGCC-GCG--GGGGCg -3'
miRNA:   3'- uCGU-AUCGGAGC-CGGuCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 88233 0.67 0.758354
Target:  5'- cGCcggAGCCgaGGCCGGCGcggcgcGGGGCg -3'
miRNA:   3'- uCGua-UCGGagCCGGUCGCau----CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 87111 0.68 0.719049
Target:  5'- aGGUGU--CUUCGGCCAGCGcgcggcucGGGGGCu -3'
miRNA:   3'- -UCGUAucGGAGCCGGUCGCa-------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 85678 0.67 0.73889
Target:  5'- cAGCAgcGCCa-GGCCGGCGaAGAcGCc -3'
miRNA:   3'- -UCGUauCGGagCCGGUCGCaUCUcCG- -5'
6492 5' -57.4 NC_001847.1 + 84764 0.78 0.215504
Target:  5'- gAGCAUGGCCaCGGCCAGC--AG-GGCg -3'
miRNA:   3'- -UCGUAUCGGaGCCGGUCGcaUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 84553 0.67 0.729012
Target:  5'- gGGCGUGcGCCUcguacaCGGCCuccucGuCGUcAGAGGCg -3'
miRNA:   3'- -UCGUAU-CGGA------GCCGGu----C-GCA-UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 83262 0.67 0.777363
Target:  5'- aAGCGcGGCgggGGCgGGCGcAGAGGCg -3'
miRNA:   3'- -UCGUaUCGgagCCGgUCGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 83121 0.66 0.82242
Target:  5'- cGCGUAGCaccucCUCGGCggccgccgCGGCGUcGGGcGCg -3'
miRNA:   3'- uCGUAUCG-----GAGCCG--------GUCGCAuCUC-CG- -5'
6492 5' -57.4 NC_001847.1 + 82894 0.66 0.804865
Target:  5'- cGCAgccaAGCCgCGGCgcgCGGCGcccGGGGGCu -3'
miRNA:   3'- uCGUa---UCGGaGCCG---GUCGCa--UCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.