miRNA display CGI


Results 101 - 120 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 82469 0.67 0.774544
Target:  5'- gGGCccGGCCcCGGCCacggggccgccgaaGGCGUAGGucgcgucuGGCg -3'
miRNA:   3'- -UCGuaUCGGaGCCGG--------------UCGCAUCU--------CCG- -5'
6492 5' -57.4 NC_001847.1 + 79575 0.66 0.786675
Target:  5'- cGCcgGGCUcgCGGCCucuucgggcgggGGCGccGGGGGCg -3'
miRNA:   3'- uCGuaUCGGa-GCCGG------------UCGCa-UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 78972 0.67 0.777363
Target:  5'- cGCGcAGCCUCGGg-GGCGUGcucGGGCg -3'
miRNA:   3'- uCGUaUCGGAGCCggUCGCAUc--UCCG- -5'
6492 5' -57.4 NC_001847.1 + 77824 0.76 0.294946
Target:  5'- cGCGUgccGGCCUuuuugcgccacUGGCCAGCGcgcUGGGGGCg -3'
miRNA:   3'- uCGUA---UCGGA-----------GCCGGUCGC---AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 75099 0.68 0.719049
Target:  5'- cGCGccGCCUCGcGCCcGaCGaAGAGGCc -3'
miRNA:   3'- uCGUauCGGAGC-CGGuC-GCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 75030 0.71 0.525347
Target:  5'- gGGCAgaaggcGCCgUCGGUgGGCG-GGAGGCu -3'
miRNA:   3'- -UCGUau----CGG-AGCCGgUCGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 74991 0.66 0.830937
Target:  5'- gGGCGccaGGCUcagUCcGCCGGCGggcgGGGGGCc -3'
miRNA:   3'- -UCGUa--UCGG---AGcCGGUCGCa---UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 74675 0.69 0.635331
Target:  5'- cGGCcgAGCCgcggcaggacggCGGCCGGCGcuuuugccugUAcGGGGCg -3'
miRNA:   3'- -UCGuaUCGGa-----------GCCGGUCGC----------AU-CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 74289 0.75 0.309018
Target:  5'- cGCGcUGGCCUCGGCgGGCGcGGAGcuGCu -3'
miRNA:   3'- uCGU-AUCGGAGCCGgUCGCaUCUC--CG- -5'
6492 5' -57.4 NC_001847.1 + 74162 0.66 0.804865
Target:  5'- uGGCGgcGCCUC--UCGGCGUGG-GGCc -3'
miRNA:   3'- -UCGUauCGGAGccGGUCGCAUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 72575 0.7 0.606465
Target:  5'- cGCAaAGCCgagcaaccgCGGCCgcGGCGgcagaAGGGGCa -3'
miRNA:   3'- uCGUaUCGGa--------GCCGG--UCGCa----UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 71448 0.69 0.637394
Target:  5'- gGGCGcGGCUUUGaGCUgAGCGUGGAccGGCa -3'
miRNA:   3'- -UCGUaUCGGAGC-CGG-UCGCAUCU--CCG- -5'
6492 5' -57.4 NC_001847.1 + 71077 0.78 0.20505
Target:  5'- uGGC--GGCgCUCGGCCGGCGcggccAGAGGCg -3'
miRNA:   3'- -UCGuaUCG-GAGCCGGUCGCa----UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 70751 0.68 0.677509
Target:  5'- aGGCggaccugGUGGCCguuggggacCGGCUAGUGUuuuuGGAGGCc -3'
miRNA:   3'- -UCG-------UAUCGGa--------GCCGGUCGCA----UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 70691 0.68 0.678532
Target:  5'- cGCGccGCCgCGGgCGGCGgcGGGGGCg -3'
miRNA:   3'- uCGUauCGGaGCCgGUCGCa-UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 69615 0.67 0.729012
Target:  5'- gAGCGcccCCUCGGUgAGCGcGGAGaGCg -3'
miRNA:   3'- -UCGUaucGGAGCCGgUCGCaUCUC-CG- -5'
6492 5' -57.4 NC_001847.1 + 69457 0.68 0.70901
Target:  5'- gGGCGUAGCUcgcggggcaCGGCCAGCugcgcgaugGUGcGGGCg -3'
miRNA:   3'- -UCGUAUCGGa--------GCCGGUCG---------CAUcUCCG- -5'
6492 5' -57.4 NC_001847.1 + 69243 0.66 0.830937
Target:  5'- cGGCAacgcUGGCCUacuacgcgCGGCUGGCGgcGgccgcGGGCu -3'
miRNA:   3'- -UCGU----AUCGGA--------GCCGGUCGCauC-----UCCG- -5'
6492 5' -57.4 NC_001847.1 + 68443 0.7 0.57571
Target:  5'- cAGCAUGGCgCgggaGcGCCcGCuGUGGAGGCg -3'
miRNA:   3'- -UCGUAUCG-Gag--C-CGGuCG-CAUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 68057 0.7 0.555398
Target:  5'- cGGC--GGCCUCGcggcgcGCCuGCGgcGGGGCg -3'
miRNA:   3'- -UCGuaUCGGAGC------CGGuCGCauCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.