miRNA display CGI


Results 41 - 60 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 77824 0.76 0.294946
Target:  5'- cGCGUgccGGCCUuuuugcgccacUGGCCAGCGcgcUGGGGGCg -3'
miRNA:   3'- uCGUA---UCGGA-----------GCCGGUCGC---AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 12937 0.77 0.26196
Target:  5'- gGGCAcccGGCCcCGGCUAGUGUGGcGGCg -3'
miRNA:   3'- -UCGUa--UCGGaGCCGGUCGCAUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 84764 0.78 0.215504
Target:  5'- gAGCAUGGCCaCGGCCAGC--AG-GGCg -3'
miRNA:   3'- -UCGUAUCGGaGCCGGUCGcaUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 71077 0.78 0.20505
Target:  5'- uGGC--GGCgCUCGGCCGGCGcggccAGAGGCg -3'
miRNA:   3'- -UCGuaUCG-GAGCCGGUCGCa----UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 5973 0.78 0.199989
Target:  5'- cGCGUaAGCCUCGGCUuuGCG-GGGGGCa -3'
miRNA:   3'- uCGUA-UCGGAGCCGGu-CGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 66485 0.74 0.386942
Target:  5'- cGGCAcgucgUGcGUgUCGGCCAGCGgcgcggUGGAGGCg -3'
miRNA:   3'- -UCGU-----AU-CGgAGCCGGUCGC------AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 99763 0.73 0.395414
Target:  5'- cGGCAgugAGCCgccgCGGCUuugGGCG-GGGGGCa -3'
miRNA:   3'- -UCGUa--UCGGa---GCCGG---UCGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 134271 0.72 0.476742
Target:  5'- cGGCGcgGGCCgccGCCGcGCGUGGAGGUg -3'
miRNA:   3'- -UCGUa-UCGGagcCGGU-CGCAUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 10854 0.72 0.476742
Target:  5'- cGCGUGGCCgaggcgCGGCgGGCGc--GGGCg -3'
miRNA:   3'- uCGUAUCGGa-----GCCGgUCGCaucUCCG- -5'
6492 5' -57.4 NC_001847.1 + 37577 0.72 0.457927
Target:  5'- cGGCGcUGGCCgcugCGGCUgcGGCGgccGGGGGCc -3'
miRNA:   3'- -UCGU-AUCGGa---GCCGG--UCGCa--UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 10718 0.72 0.457927
Target:  5'- gAGgAgGGCCUCccggaguauguGGCCGGCGUAcAGGCg -3'
miRNA:   3'- -UCgUaUCGGAG-----------CCGGUCGCAUcUCCG- -5'
6492 5' -57.4 NC_001847.1 + 46913 0.72 0.44867
Target:  5'- cGCGccGGCCUCGGCUc-CGgcGAGGCg -3'
miRNA:   3'- uCGUa-UCGGAGCCGGucGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 104919 0.72 0.44867
Target:  5'- cGGCGgcgGGCCgcgaucUCGGCCAGCGccucGGGGUc -3'
miRNA:   3'- -UCGUa--UCGG------AGCCGGUCGCau--CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 36955 0.72 0.44867
Target:  5'- gAGCGggGGCUgCGGCCAGCGc--GGGCg -3'
miRNA:   3'- -UCGUa-UCGGaGCCGGUCGCaucUCCG- -5'
6492 5' -57.4 NC_001847.1 + 101159 0.72 0.439516
Target:  5'- gGGCcggGGCCggGGCCGGgGUcGGGGCg -3'
miRNA:   3'- -UCGua-UCGGagCCGGUCgCAuCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 134506 0.72 0.439516
Target:  5'- uGUcgGGCCUCGGg-GGCGgggGGAGGCg -3'
miRNA:   3'- uCGuaUCGGAGCCggUCGCa--UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 132408 0.72 0.439516
Target:  5'- cGCcgGGCCgggGGCCGGUggaaGUGGAGGUg -3'
miRNA:   3'- uCGuaUCGGag-CCGGUCG----CAUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 125205 0.73 0.430471
Target:  5'- aGGCGcccgGGCCgCGGCgAGCGUgcucguccgcGGGGGCg -3'
miRNA:   3'- -UCGUa---UCGGaGCCGgUCGCA----------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 96905 0.73 0.421535
Target:  5'- cGCGcgGGaCUggCGGCC-GCGUAGAGGCg -3'
miRNA:   3'- uCGUa-UC-GGa-GCCGGuCGCAUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 48841 0.73 0.412712
Target:  5'- cGCGggggcGCCUCGGCCGcGCGgcgcGAGGUa -3'
miRNA:   3'- uCGUau---CGGAGCCGGU-CGCau--CUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.