Results 61 - 80 of 300 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6492 | 5' | -57.4 | NC_001847.1 | + | 132408 | 0.72 | 0.439516 |
Target: 5'- cGCcgGGCCgggGGCCGGUggaaGUGGAGGUg -3' miRNA: 3'- uCGuaUCGGag-CCGGUCG----CAUCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 134506 | 0.72 | 0.439516 |
Target: 5'- uGUcgGGCCUCGGg-GGCGgggGGAGGCg -3' miRNA: 3'- uCGuaUCGGAGCCggUCGCa--UCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 97530 | 0.71 | 0.515465 |
Target: 5'- cGCuAUGGUguaCUUGGCCAGCGUGcgcuuGAGGUc -3' miRNA: 3'- uCG-UAUCG---GAGCCGGUCGCAU-----CUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 75030 | 0.71 | 0.525347 |
Target: 5'- gGGCAgaaggcGCCgUCGGUgGGCG-GGAGGCu -3' miRNA: 3'- -UCGUau----CGG-AGCCGgUCGCaUCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 105772 | 0.71 | 0.525347 |
Target: 5'- cGGCGgccGCCUCGGCggCAGCGccgccGGGGCc -3' miRNA: 3'- -UCGUau-CGGAGCCG--GUCGCau---CUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 104307 | 0.71 | 0.534302 |
Target: 5'- cGGCGgcGCCUCGggguagaGCCGcGCGUAGGcGGCc -3' miRNA: 3'- -UCGUauCGGAGC-------CGGU-CGCAUCU-CCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 135135 | 0.71 | 0.535301 |
Target: 5'- cGCAgggGGCCcgcgCGGCgCGGCGcGGAGGg -3' miRNA: 3'- uCGUa--UCGGa---GCCG-GUCGCaUCUCCg -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 14677 | 0.71 | 0.535301 |
Target: 5'- cGGCGcGGCCggCGGCgCGGCGaUGGAgcaGGCg -3' miRNA: 3'- -UCGUaUCGGa-GCCG-GUCGC-AUCU---CCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 12464 | 0.71 | 0.545319 |
Target: 5'- cGGCGgAGCCUccgCGGCUucccGCGUGGcGGCg -3' miRNA: 3'- -UCGUaUCGGA---GCCGGu---CGCAUCuCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 13798 | 0.71 | 0.545319 |
Target: 5'- uGCGUAGCC--GGCgCAGCGguguacGGGGGCc -3' miRNA: 3'- uCGUAUCGGagCCG-GUCGCa-----UCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 106892 | 0.72 | 0.486292 |
Target: 5'- cAGCcucGGCCUCGGCCucAGCGUc--GGCg -3' miRNA: 3'- -UCGua-UCGGAGCCGG--UCGCAucuCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 30420 | 0.72 | 0.486292 |
Target: 5'- cGGCA-AGCUcgUGGCgGGCGcGGAGGCg -3' miRNA: 3'- -UCGUaUCGGa-GCCGgUCGCaUCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 101159 | 0.72 | 0.439516 |
Target: 5'- gGGCcggGGCCggGGCCGGgGUcGGGGCg -3' miRNA: 3'- -UCGua-UCGGagCCGGUCgCAuCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 36955 | 0.72 | 0.44867 |
Target: 5'- gAGCGggGGCUgCGGCCAGCGc--GGGCg -3' miRNA: 3'- -UCGUa-UCGGaGCCGGUCGCaucUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 104919 | 0.72 | 0.44867 |
Target: 5'- cGGCGgcgGGCCgcgaucUCGGCCAGCGccucGGGGUc -3' miRNA: 3'- -UCGUa--UCGG------AGCCGGUCGCau--CUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 46913 | 0.72 | 0.44867 |
Target: 5'- cGCGccGGCCUCGGCUc-CGgcGAGGCg -3' miRNA: 3'- uCGUa-UCGGAGCCGGucGCauCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 10718 | 0.72 | 0.457927 |
Target: 5'- gAGgAgGGCCUCccggaguauguGGCCGGCGUAcAGGCg -3' miRNA: 3'- -UCgUaUCGGAG-----------CCGGUCGCAUcUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 37577 | 0.72 | 0.457927 |
Target: 5'- cGGCGcUGGCCgcugCGGCUgcGGCGgccGGGGGCc -3' miRNA: 3'- -UCGU-AUCGGa---GCCGG--UCGCa--UCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 10854 | 0.72 | 0.476742 |
Target: 5'- cGCGUGGCCgaggcgCGGCgGGCGc--GGGCg -3' miRNA: 3'- uCGUAUCGGa-----GCCGgUCGCaucUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 134271 | 0.72 | 0.476742 |
Target: 5'- cGGCGcgGGCCgccGCCGcGCGUGGAGGUg -3' miRNA: 3'- -UCGUa-UCGGagcCGGU-CGCAUCUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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