miRNA display CGI


Results 81 - 100 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 27155 0.7 0.56553
Target:  5'- gGGCGcAGCCgcggCGGCCAGCccaauaaugucGgcGGGGUg -3'
miRNA:   3'- -UCGUaUCGGa---GCCGGUCG-----------CauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 67692 0.7 0.56553
Target:  5'- cGGCAUAGCuCUCGGCgAG-GUGcucGAGcGCg -3'
miRNA:   3'- -UCGUAUCG-GAGCCGgUCgCAU---CUC-CG- -5'
6492 5' -57.4 NC_001847.1 + 111420 0.7 0.56553
Target:  5'- gGGC--GGCgCUCGGCCGGgGgcGGGGg -3'
miRNA:   3'- -UCGuaUCG-GAGCCGGUCgCauCUCCg -5'
6492 5' -57.4 NC_001847.1 + 50099 0.7 0.57571
Target:  5'- aGGCu--GCCgcgcCGGgCGGCGUAGAGcGCc -3'
miRNA:   3'- -UCGuauCGGa---GCCgGUCGCAUCUC-CG- -5'
6492 5' -57.4 NC_001847.1 + 17791 0.7 0.57571
Target:  5'- cGGCGgGGCuuugCUCGGCC-GCG-GGGGGCg -3'
miRNA:   3'- -UCGUaUCG----GAGCCGGuCGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 8460 0.7 0.584906
Target:  5'- uGGCAUGGCaauaUCGuacCCGGCGUccucgucgcguuuGGGGGCg -3'
miRNA:   3'- -UCGUAUCGg---AGCc--GGUCGCA-------------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 29246 0.7 0.58593
Target:  5'- uGCAUGGCCccgCGGCCGcGCacggacuacGUGGcGGCg -3'
miRNA:   3'- uCGUAUCGGa--GCCGGU-CG---------CAUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 13798 0.71 0.545319
Target:  5'- uGCGUAGCC--GGCgCAGCGguguacGGGGGCc -3'
miRNA:   3'- uCGUAUCGGagCCG-GUCGCa-----UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 12464 0.71 0.545319
Target:  5'- cGGCGgAGCCUccgCGGCUucccGCGUGGcGGCg -3'
miRNA:   3'- -UCGUaUCGGA---GCCGGu---CGCAUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 14677 0.71 0.535301
Target:  5'- cGGCGcGGCCggCGGCgCGGCGaUGGAgcaGGCg -3'
miRNA:   3'- -UCGUaUCGGa-GCCG-GUCGC-AUCU---CCG- -5'
6492 5' -57.4 NC_001847.1 + 10854 0.72 0.476742
Target:  5'- cGCGUGGCCgaggcgCGGCgGGCGc--GGGCg -3'
miRNA:   3'- uCGUAUCGGa-----GCCGgUCGCaucUCCG- -5'
6492 5' -57.4 NC_001847.1 + 134271 0.72 0.476742
Target:  5'- cGGCGcgGGCCgccGCCGcGCGUGGAGGUg -3'
miRNA:   3'- -UCGUa-UCGGagcCGGU-CGCAUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 30420 0.72 0.486292
Target:  5'- cGGCA-AGCUcgUGGCgGGCGcGGAGGCg -3'
miRNA:   3'- -UCGUaUCGGa-GCCGgUCGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 106892 0.72 0.486292
Target:  5'- cAGCcucGGCCUCGGCCucAGCGUc--GGCg -3'
miRNA:   3'- -UCGua-UCGGAGCCGG--UCGCAucuCCG- -5'
6492 5' -57.4 NC_001847.1 + 97530 0.71 0.515465
Target:  5'- cGCuAUGGUguaCUUGGCCAGCGUGcgcuuGAGGUc -3'
miRNA:   3'- uCG-UAUCG---GAGCCGGUCGCAU-----CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 75030 0.71 0.525347
Target:  5'- gGGCAgaaggcGCCgUCGGUgGGCG-GGAGGCu -3'
miRNA:   3'- -UCGUau----CGG-AGCCGgUCGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 105772 0.71 0.525347
Target:  5'- cGGCGgccGCCUCGGCggCAGCGccgccGGGGCc -3'
miRNA:   3'- -UCGUau-CGGAGCCG--GUCGCau---CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 104307 0.71 0.534302
Target:  5'- cGGCGgcGCCUCGggguagaGCCGcGCGUAGGcGGCc -3'
miRNA:   3'- -UCGUauCGGAGC-------CGGU-CGCAUCU-CCG- -5'
6492 5' -57.4 NC_001847.1 + 135135 0.71 0.535301
Target:  5'- cGCAgggGGCCcgcgCGGCgCGGCGcGGAGGg -3'
miRNA:   3'- uCGUa--UCGGa---GCCG-GUCGCaUCUCCg -5'
6492 5' -57.4 NC_001847.1 + 120746 0.7 0.58593
Target:  5'- gAGCGgGGCCUCGcGCCAGCuc---GGCg -3'
miRNA:   3'- -UCGUaUCGGAGC-CGGUCGcaucuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.