miRNA display CGI


Results 101 - 120 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 30734 0.69 0.616766
Target:  5'- cGGaCGUGGCCgacugGGCgGGCGUAGAccgcGGCc -3'
miRNA:   3'- -UC-GUAUCGGag---CCGgUCGCAUCU----CCG- -5'
6492 5' -57.4 NC_001847.1 + 33926 0.69 0.616766
Target:  5'- uGGC--AGCCuUCGGCCGGUaccgcGAGGCg -3'
miRNA:   3'- -UCGuaUCGG-AGCCGGUCGcau--CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 131805 0.69 0.616766
Target:  5'- -cCAUGGCCUacccggaGGCCGGCGccGGcGGCa -3'
miRNA:   3'- ucGUAUCGGAg------CCGGUCGCa-UCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 13139 0.69 0.616766
Target:  5'- cGCGccGCCUgccgCGGCCGGCGguuGGGCu -3'
miRNA:   3'- uCGUauCGGA----GCCGGUCGCaucUCCG- -5'
6492 5' -57.4 NC_001847.1 + 48394 0.69 0.616766
Target:  5'- gGGCcgGGCCUCGGCggcaaAGCG-GGAcGCg -3'
miRNA:   3'- -UCGuaUCGGAGCCGg----UCGCaUCUcCG- -5'
6492 5' -57.4 NC_001847.1 + 50099 0.7 0.57571
Target:  5'- aGGCu--GCCgcgcCGGgCGGCGUAGAGcGCc -3'
miRNA:   3'- -UCGuauCGGa---GCCgGUCGCAUCUC-CG- -5'
6492 5' -57.4 NC_001847.1 + 111420 0.7 0.56553
Target:  5'- gGGC--GGCgCUCGGCCGGgGgcGGGGg -3'
miRNA:   3'- -UCGuaUCG-GAGCCGGUCgCauCUCCg -5'
6492 5' -57.4 NC_001847.1 + 97530 0.71 0.515465
Target:  5'- cGCuAUGGUguaCUUGGCCAGCGUGcgcuuGAGGUc -3'
miRNA:   3'- uCG-UAUCG---GAGCCGGUCGCAU-----CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 75030 0.71 0.525347
Target:  5'- gGGCAgaaggcGCCgUCGGUgGGCG-GGAGGCu -3'
miRNA:   3'- -UCGUau----CGG-AGCCGgUCGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 105772 0.71 0.525347
Target:  5'- cGGCGgccGCCUCGGCggCAGCGccgccGGGGCc -3'
miRNA:   3'- -UCGUau-CGGAGCCG--GUCGCau---CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 104307 0.71 0.534302
Target:  5'- cGGCGgcGCCUCGggguagaGCCGcGCGUAGGcGGCc -3'
miRNA:   3'- -UCGUauCGGAGC-------CGGU-CGCAUCU-CCG- -5'
6492 5' -57.4 NC_001847.1 + 135135 0.71 0.535301
Target:  5'- cGCAgggGGCCcgcgCGGCgCGGCGcGGAGGg -3'
miRNA:   3'- uCGUa--UCGGa---GCCG-GUCGCaUCUCCg -5'
6492 5' -57.4 NC_001847.1 + 14677 0.71 0.535301
Target:  5'- cGGCGcGGCCggCGGCgCGGCGaUGGAgcaGGCg -3'
miRNA:   3'- -UCGUaUCGGa-GCCG-GUCGC-AUCU---CCG- -5'
6492 5' -57.4 NC_001847.1 + 12464 0.71 0.545319
Target:  5'- cGGCGgAGCCUccgCGGCUucccGCGUGGcGGCg -3'
miRNA:   3'- -UCGUaUCGGA---GCCGGu---CGCAUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 13798 0.71 0.545319
Target:  5'- uGCGUAGCC--GGCgCAGCGguguacGGGGGCc -3'
miRNA:   3'- uCGUAUCGGagCCG-GUCGCa-----UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 68057 0.7 0.555398
Target:  5'- cGGC--GGCCUCGcggcgcGCCuGCGgcGGGGCg -3'
miRNA:   3'- -UCGuaUCGGAGC------CGGuCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 123781 0.7 0.56553
Target:  5'- uGCAuUGGCCUCggGGCCuGCGcGGcGGCg -3'
miRNA:   3'- uCGU-AUCGGAG--CCGGuCGCaUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 60028 0.7 0.56553
Target:  5'- gAGCGU-GCCgUCGGCCucuucgucgGGCGc-GAGGCg -3'
miRNA:   3'- -UCGUAuCGG-AGCCGG---------UCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 27155 0.7 0.56553
Target:  5'- gGGCGcAGCCgcggCGGCCAGCccaauaaugucGgcGGGGUg -3'
miRNA:   3'- -UCGUaUCGGa---GCCGGUCG-----------CauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 67692 0.7 0.56553
Target:  5'- cGGCAUAGCuCUCGGCgAG-GUGcucGAGcGCg -3'
miRNA:   3'- -UCGUAUCG-GAGCCGgUCgCAU---CUC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.