miRNA display CGI


Results 41 - 60 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 31159 0.67 0.781105
Target:  5'- cGGCgGUGGCCUucugcgCGGCCGcgcugccggagccgcGCGccGAGGCg -3'
miRNA:   3'- -UCG-UAUCGGA------GCCGGU---------------CGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 10704 0.66 0.812848
Target:  5'- gGGCGcGGCCcgCGccggccaagcgccGCCAGCGaguuuagGGGGGCg -3'
miRNA:   3'- -UCGUaUCGGa-GC-------------CGGUCGCa------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 876 0.66 0.830937
Target:  5'- cGCGcGGCggCGGCCcGCGccGGGGCc -3'
miRNA:   3'- uCGUaUCGgaGCCGGuCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 32923 0.66 0.786675
Target:  5'- cGCGgacgGGaggaGGCCGGCGgcGGGGCc -3'
miRNA:   3'- uCGUa---UCggagCCGGUCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 116112 0.66 0.830937
Target:  5'- gGGCugcuucucGGCCuuUCGGCCGGgCGcuGGGGCg -3'
miRNA:   3'- -UCGua------UCGG--AGCCGGUC-GCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 127346 0.67 0.729012
Target:  5'- cGGCu--GCCgCGGCaggGGCGgcGGGGCc -3'
miRNA:   3'- -UCGuauCGGaGCCGg--UCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 58191 0.66 0.82242
Target:  5'- aAGCc--GCCuUCGGCCAGCaGgcGcuccGGGCg -3'
miRNA:   3'- -UCGuauCGG-AGCCGGUCG-CauC----UCCG- -5'
6492 5' -57.4 NC_001847.1 + 98818 0.67 0.729012
Target:  5'- cGGCAcgAGCUUaaaguaGGCUu-CGUAGAGGCg -3'
miRNA:   3'- -UCGUa-UCGGAg-----CCGGucGCAUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 2391 0.67 0.748674
Target:  5'- cGCcgGcGCCUCGGCCcagAGuCGUccucccccgAGGGGCc -3'
miRNA:   3'- uCGuaU-CGGAGCCGG---UC-GCA---------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 57956 0.67 0.748674
Target:  5'- gGGCAgcAGCg-CGGUCgcGGCGUcgGGAGGCa -3'
miRNA:   3'- -UCGUa-UCGgaGCCGG--UCGCA--UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 19845 0.67 0.758354
Target:  5'- cAGCGc--CCUUGGCCcGCGcccGGGGGCg -3'
miRNA:   3'- -UCGUaucGGAGCCGGuCGCa--UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 58269 0.67 0.76792
Target:  5'- aGGCA-GGCCuccaugugcUCGGCC-GCGgcGAcGGCg -3'
miRNA:   3'- -UCGUaUCGG---------AGCCGGuCGCauCU-CCG- -5'
6492 5' -57.4 NC_001847.1 + 42933 0.67 0.777363
Target:  5'- uGC-UGGCCgcccaagCGGCCGacgccgcgcGCGggGGGGGCg -3'
miRNA:   3'- uCGuAUCGGa------GCCGGU---------CGCa-UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 42085 0.66 0.786675
Target:  5'- cGCAUcGGCCUCGcgguGCCGGCaccGUccaggcgccGGGGGCc -3'
miRNA:   3'- uCGUA-UCGGAGC----CGGUCG---CA---------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 35827 0.66 0.795845
Target:  5'- uAGCuucGGCCccCGGCgGGCGgcGAugGGCg -3'
miRNA:   3'- -UCGua-UCGGa-GCCGgUCGCauCU--CCG- -5'
6492 5' -57.4 NC_001847.1 + 119153 0.66 0.80397
Target:  5'- cGGC---GCCgCGGCCgccgcggGGCGgcGGGGCa -3'
miRNA:   3'- -UCGuauCGGaGCCGG-------UCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 120928 0.66 0.804865
Target:  5'- gGGCGgGGCgggCGcGCgGGCGUGGuGGCu -3'
miRNA:   3'- -UCGUaUCGga-GC-CGgUCGCAUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 32669 0.66 0.813726
Target:  5'- uGCcUGGCCugcaUCcGCCGGUGgcuggAGGGGCg -3'
miRNA:   3'- uCGuAUCGG----AGcCGGUCGCa----UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 100388 0.66 0.813726
Target:  5'- cGCGcAGCCgcgccagcUCGGCC-GCGUcGaAGGCg -3'
miRNA:   3'- uCGUaUCGG--------AGCCGGuCGCAuC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 98285 0.66 0.82242
Target:  5'- cGCGUAGagCUCGGCCGcCGccGAGcGCa -3'
miRNA:   3'- uCGUAUCg-GAGCCGGUcGCauCUC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.