miRNA display CGI


Results 61 - 80 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 42933 0.67 0.777363
Target:  5'- uGC-UGGCCgcccaagCGGCCGacgccgcgcGCGggGGGGGCg -3'
miRNA:   3'- uCGuAUCGGa------GCCGGU---------CGCa-UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 16679 0.67 0.758354
Target:  5'- cGCGcAGCCUUGGCUgcgcgGGCGagccGGcAGGCg -3'
miRNA:   3'- uCGUaUCGGAGCCGG-----UCGCa---UC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 14135 0.66 0.82242
Target:  5'- gGGCGU-GUCUcCGGCCggcugcgcagcGGCGgccGGGGCg -3'
miRNA:   3'- -UCGUAuCGGA-GCCGG-----------UCGCau-CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 83121 0.66 0.82242
Target:  5'- cGCGUAGCaccucCUCGGCggccgccgCGGCGUcGGGcGCg -3'
miRNA:   3'- uCGUAUCG-----GAGCCG--------GUCGCAuCUC-CG- -5'
6492 5' -57.4 NC_001847.1 + 66468 0.66 0.813726
Target:  5'- gGGCAcggUAGUCUCagucGCCcgcaggGGCGgGGAGGCg -3'
miRNA:   3'- -UCGU---AUCGGAGc---CGG------UCGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 31426 0.66 0.813726
Target:  5'- cGGCG-GGCggCGGCCGGCGgccGcGGCg -3'
miRNA:   3'- -UCGUaUCGgaGCCGGUCGCau-CuCCG- -5'
6492 5' -57.4 NC_001847.1 + 96243 0.66 0.804865
Target:  5'- gGGCcggAGUCagGGCCGGCGgcGGcaauGGCg -3'
miRNA:   3'- -UCGua-UCGGagCCGGUCGCauCU----CCG- -5'
6492 5' -57.4 NC_001847.1 + 121772 0.66 0.795845
Target:  5'- cGCGUAGCgCUCauuuGCC-GUGUAGccGGGCg -3'
miRNA:   3'- uCGUAUCG-GAGc---CGGuCGCAUC--UCCG- -5'
6492 5' -57.4 NC_001847.1 + 34905 0.66 0.795845
Target:  5'- uGGCGcuuuggGGUCUC-GCCAGCG-AGAGaGCu -3'
miRNA:   3'- -UCGUa-----UCGGAGcCGGUCGCaUCUC-CG- -5'
6492 5' -57.4 NC_001847.1 + 5209 0.66 0.786675
Target:  5'- cGGCucucucGCCgcggCGGCCGGCG---GGGCg -3'
miRNA:   3'- -UCGuau---CGGa---GCCGGUCGCaucUCCG- -5'
6492 5' -57.4 NC_001847.1 + 49589 0.69 0.647706
Target:  5'- cGGCGgcGCCUgGGCgCAGCGggAGcucGGCg -3'
miRNA:   3'- -UCGUauCGGAgCCG-GUCGCa-UCu--CCG- -5'
6492 5' -57.4 NC_001847.1 + 15306 0.69 0.658006
Target:  5'- cGGCAcGGCgUCgggGGCCgcgGGCGUagcGGGGGCg -3'
miRNA:   3'- -UCGUaUCGgAG---CCGG---UCGCA---UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 92985 0.67 0.748674
Target:  5'- cGGCGUgcAGCCacacGCgAGCGcUGGAGGCg -3'
miRNA:   3'- -UCGUA--UCGGagc-CGgUCGC-AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 30485 0.67 0.748674
Target:  5'- cGCAc-GCCUgGGCCGgGCGcUGGAcgGGCg -3'
miRNA:   3'- uCGUauCGGAgCCGGU-CGC-AUCU--CCG- -5'
6492 5' -57.4 NC_001847.1 + 98818 0.67 0.729012
Target:  5'- cGGCAcgAGCUUaaaguaGGCUu-CGUAGAGGCg -3'
miRNA:   3'- -UCGUa-UCGGAg-----CCGGucGCAUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 127346 0.67 0.729012
Target:  5'- cGGCu--GCCgCGGCaggGGCGgcGGGGCc -3'
miRNA:   3'- -UCGuauCGGaGCCGg--UCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 75099 0.68 0.719049
Target:  5'- cGCGccGCCUCGcGCCcGaCGaAGAGGCc -3'
miRNA:   3'- uCGUauCGGAGC-CGGuC-GCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 47556 0.68 0.719049
Target:  5'- cGGCGccGGCCUCGGugagcacgggcaCCucgcccgaGGCGUAGuGGCg -3'
miRNA:   3'- -UCGUa-UCGGAGCC------------GG--------UCGCAUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 40952 0.68 0.698905
Target:  5'- cGCAgcGCCUCGaacuGCCcGCGc-GAGGCg -3'
miRNA:   3'- uCGUauCGGAGC----CGGuCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 232 0.68 0.688742
Target:  5'- gAGCccgGGCCUCGcGCCccgacgcccGGCGcccAGGGGCc -3'
miRNA:   3'- -UCGua-UCGGAGC-CGG---------UCGCa--UCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.