miRNA display CGI


Results 81 - 100 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 56221 0.67 0.748674
Target:  5'- cAGCAgGGCUUCGuCCAucuGCacgagGUAGAGGCg -3'
miRNA:   3'- -UCGUaUCGGAGCcGGU---CG-----CAUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 134472 0.67 0.7477
Target:  5'- uGGCAUAGgCgCGGCCAacgaagugcacggGUGUAGuguGGGCc -3'
miRNA:   3'- -UCGUAUCgGaGCCGGU-------------CGCAUC---UCCG- -5'
6492 5' -57.4 NC_001847.1 + 57834 0.67 0.729012
Target:  5'- cGCGUcGaaccaCUCGGUCAGUGUGcGGGCc -3'
miRNA:   3'- uCGUAuCg----GAGCCGGUCGCAUcUCCG- -5'
6492 5' -57.4 NC_001847.1 + 62727 0.67 0.729012
Target:  5'- cGCGUugcGGCCgUGGCCGuccccGCGUcGGGGCc -3'
miRNA:   3'- uCGUA---UCGGaGCCGGU-----CGCAuCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 31082 0.68 0.719049
Target:  5'- cGGCGc-GCCgcugCGGCCGGUGUAccuGGCc -3'
miRNA:   3'- -UCGUauCGGa---GCCGGUCGCAUcu-CCG- -5'
6492 5' -57.4 NC_001847.1 + 40952 0.68 0.698905
Target:  5'- cGCAgcGCCUCGaacuGCCcGCGc-GAGGCg -3'
miRNA:   3'- uCGUauCGGAGC----CGGuCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 232 0.68 0.688742
Target:  5'- gAGCccgGGCCUCGcGCCccgacgcccGGCGcccAGGGGCc -3'
miRNA:   3'- -UCGua-UCGGAGC-CGG---------UCGCa--UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 5209 0.66 0.786675
Target:  5'- cGGCucucucGCCgcggCGGCCGGCG---GGGCg -3'
miRNA:   3'- -UCGuau---CGGa---GCCGGUCGCaucUCCG- -5'
6492 5' -57.4 NC_001847.1 + 34905 0.66 0.795845
Target:  5'- uGGCGcuuuggGGUCUC-GCCAGCG-AGAGaGCu -3'
miRNA:   3'- -UCGUa-----UCGGAGcCGGUCGCaUCUC-CG- -5'
6492 5' -57.4 NC_001847.1 + 121772 0.66 0.795845
Target:  5'- cGCGUAGCgCUCauuuGCC-GUGUAGccGGGCg -3'
miRNA:   3'- uCGUAUCG-GAGc---CGGuCGCAUC--UCCG- -5'
6492 5' -57.4 NC_001847.1 + 72575 0.7 0.606465
Target:  5'- cGCAaAGCCgagcaaccgCGGCCgcGGCGgcagaAGGGGCa -3'
miRNA:   3'- uCGUaUCGGa--------GCCGG--UCGCa----UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 29376 0.7 0.58593
Target:  5'- uGCGc-GCCgaggCGGCCGccGCGcUGGAGGCg -3'
miRNA:   3'- uCGUauCGGa---GCCGGU--CGC-AUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 102404 0.7 0.57571
Target:  5'- cGCGaaaaUAGCCgcCGGCCGGaGgccgAGAGGCg -3'
miRNA:   3'- uCGU----AUCGGa-GCCGGUCgCa---UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 8607 0.7 0.56553
Target:  5'- gGGC--GGCgCUCGGCCGGgGgcGGGGg -3'
miRNA:   3'- -UCGuaUCG-GAGCCGGUCgCauCUCCg -5'
6492 5' -57.4 NC_001847.1 + 16949 0.7 0.564515
Target:  5'- cGCAgGGCCUCguaagagGGCCgGGCGgcagauugAGGGGCa -3'
miRNA:   3'- uCGUaUCGGAG-------CCGG-UCGCa-------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 14135 0.66 0.82242
Target:  5'- gGGCGU-GUCUcCGGCCggcugcgcagcGGCGgccGGGGCg -3'
miRNA:   3'- -UCGUAuCGGA-GCCGG-----------UCGCau-CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 83121 0.66 0.82242
Target:  5'- cGCGUAGCaccucCUCGGCggccgccgCGGCGUcGGGcGCg -3'
miRNA:   3'- uCGUAUCG-----GAGCCG--------GUCGCAuCUC-CG- -5'
6492 5' -57.4 NC_001847.1 + 66468 0.66 0.813726
Target:  5'- gGGCAcggUAGUCUCagucGCCcgcaggGGCGgGGAGGCg -3'
miRNA:   3'- -UCGU---AUCGGAGc---CGG------UCGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 31426 0.66 0.813726
Target:  5'- cGGCG-GGCggCGGCCGGCGgccGcGGCg -3'
miRNA:   3'- -UCGUaUCGgaGCCGGUCGCau-CuCCG- -5'
6492 5' -57.4 NC_001847.1 + 96243 0.66 0.804865
Target:  5'- gGGCcggAGUCagGGCCGGCGgcGGcaauGGCg -3'
miRNA:   3'- -UCGua-UCGGagCCGGUCGCauCU----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.