Results 101 - 120 of 300 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6492 | 5' | -57.4 | NC_001847.1 | + | 32994 | 0.7 | 0.57571 |
Target: 5'- gGGCAgggcGGCCggagCGGCCGGgGggcgcgcGGGGCg -3' miRNA: 3'- -UCGUa---UCGGa---GCCGGUCgCau-----CUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 101163 | 0.7 | 0.555398 |
Target: 5'- gGGCccAGCC-CGGCCAGCGcgcccGGCg -3' miRNA: 3'- -UCGuaUCGGaGCCGGUCGCaucu-CCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 50569 | 0.71 | 0.545319 |
Target: 5'- cGGCGUcGCCUCugacgacgaggaGGCC-GUGUAcGAGGCg -3' miRNA: 3'- -UCGUAuCGGAG------------CCGGuCGCAU-CUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 32322 | 0.71 | 0.535301 |
Target: 5'- cGCAgggGGCCcgcgCGGCgCGGCGcGGAGGg -3' miRNA: 3'- uCGUa--UCGGa---GCCG-GUCGCaUCUCCg -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 131918 | 0.71 | 0.525347 |
Target: 5'- cGCA-AGCCgCGG-CGGCGcGGAGGCa -3' miRNA: 3'- uCGUaUCGGaGCCgGUCGCaUCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 62727 | 0.67 | 0.729012 |
Target: 5'- cGCGUugcGGCCgUGGCCGuccccGCGUcGGGGCc -3' miRNA: 3'- uCGUA---UCGGaGCCGGU-----CGCAuCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 57834 | 0.67 | 0.729012 |
Target: 5'- cGCGUcGaaccaCUCGGUCAGUGUGcGGGCc -3' miRNA: 3'- uCGUAuCg----GAGCCGGUCGCAUcUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 14135 | 0.66 | 0.82242 |
Target: 5'- gGGCGU-GUCUcCGGCCggcugcgcagcGGCGgccGGGGCg -3' miRNA: 3'- -UCGUAuCGGA-GCCGG-----------UCGCau-CUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 83121 | 0.66 | 0.82242 |
Target: 5'- cGCGUAGCaccucCUCGGCggccgccgCGGCGUcGGGcGCg -3' miRNA: 3'- uCGUAUCG-----GAGCCG--------GUCGCAuCUC-CG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 66468 | 0.66 | 0.813726 |
Target: 5'- gGGCAcggUAGUCUCagucGCCcgcaggGGCGgGGAGGCg -3' miRNA: 3'- -UCGU---AUCGGAGc---CGG------UCGCaUCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 31426 | 0.66 | 0.813726 |
Target: 5'- cGGCG-GGCggCGGCCGGCGgccGcGGCg -3' miRNA: 3'- -UCGUaUCGgaGCCGGUCGCau-CuCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 96243 | 0.66 | 0.804865 |
Target: 5'- gGGCcggAGUCagGGCCGGCGgcGGcaauGGCg -3' miRNA: 3'- -UCGua-UCGGagCCGGUCGCauCU----CCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 121772 | 0.66 | 0.795845 |
Target: 5'- cGCGUAGCgCUCauuuGCC-GUGUAGccGGGCg -3' miRNA: 3'- uCGUAUCG-GAGc---CGGuCGCAUC--UCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 34905 | 0.66 | 0.795845 |
Target: 5'- uGGCGcuuuggGGUCUC-GCCAGCG-AGAGaGCu -3' miRNA: 3'- -UCGUa-----UCGGAGcCGGUCGCaUCUC-CG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 5209 | 0.66 | 0.786675 |
Target: 5'- cGGCucucucGCCgcggCGGCCGGCG---GGGCg -3' miRNA: 3'- -UCGuau---CGGa---GCCGGUCGCaucUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 82469 | 0.67 | 0.774544 |
Target: 5'- gGGCccGGCCcCGGCCacggggccgccgaaGGCGUAGGucgcgucuGGCg -3' miRNA: 3'- -UCGuaUCGGaGCCGG--------------UCGCAUCU--------CCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 102709 | 0.67 | 0.76792 |
Target: 5'- cGGCAgcGCCUgGGCCaccgccccgaaaAGCGgcUGGAcGGCc -3' miRNA: 3'- -UCGUauCGGAgCCGG------------UCGC--AUCU-CCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 21621 | 0.67 | 0.758354 |
Target: 5'- uGGC--GGCgCUUGGCCGGCGcGGgccgcgcccGGGCg -3' miRNA: 3'- -UCGuaUCG-GAGCCGGUCGCaUC---------UCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 56221 | 0.67 | 0.748674 |
Target: 5'- cAGCAgGGCUUCGuCCAucuGCacgagGUAGAGGCg -3' miRNA: 3'- -UCGUaUCGGAGCcGGU---CG-----CAUCUCCG- -5' |
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6492 | 5' | -57.4 | NC_001847.1 | + | 134472 | 0.67 | 0.7477 |
Target: 5'- uGGCAUAGgCgCGGCCAacgaagugcacggGUGUAGuguGGGCc -3' miRNA: 3'- -UCGUAUCgGaGCCGGU-------------CGCAUC---UCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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