miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6493 3' -47.7 NC_001847.1 + 18040 1.17 0.005637
Target:  5'- cCCGCGCCUUAUAUGCCUCAGUUUUGCg -3'
miRNA:   3'- -GGCGCGGAAUAUACGGAGUCAAAACG- -5'
6493 3' -47.7 NC_001847.1 + 40096 0.89 0.241909
Target:  5'- gCCGCGCCg---GUGCCUCGGUUgguaggUGCg -3'
miRNA:   3'- -GGCGCGGaauaUACGGAGUCAAa-----ACG- -5'
6493 3' -47.7 NC_001847.1 + 46906 0.75 0.860205
Target:  5'- cCCGCGCCgcgccgGCCUCGGcuccgGCg -3'
miRNA:   3'- -GGCGCGGaauauaCGGAGUCaaaa-CG- -5'
6493 3' -47.7 NC_001847.1 + 5966 0.75 0.883631
Target:  5'- gCGCGCgCgcGUAaGCCUCGGcUUUGCg -3'
miRNA:   3'- gGCGCG-GaaUAUaCGGAGUCaAAACG- -5'
6493 3' -47.7 NC_001847.1 + 53661 0.74 0.897988
Target:  5'- gCCGUGUCUgGUGUGCUUCgAGgagcUUUGCg -3'
miRNA:   3'- -GGCGCGGAaUAUACGGAG-UCa---AAACG- -5'
6493 3' -47.7 NC_001847.1 + 37779 0.74 0.91754
Target:  5'- cUCGCGCCUgaucAUGUGCCUgCGGcugUUUGa -3'
miRNA:   3'- -GGCGCGGAa---UAUACGGA-GUCa--AAACg -5'
6493 3' -47.7 NC_001847.1 + 23686 0.73 0.934654
Target:  5'- gUCGCGCgCUUAUAUGUCUUugAGUaggGCg -3'
miRNA:   3'- -GGCGCG-GAAUAUACGGAG--UCAaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 126499 0.73 0.934654
Target:  5'- gUCGCGCgCUUAUAUGUCUUugAGUaggGCg -3'
miRNA:   3'- -GGCGCG-GAAUAUACGGAG--UCAaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 61864 0.73 0.934654
Target:  5'- gCCGCGCCUgccggcGCCcgCGGgggUUGCa -3'
miRNA:   3'- -GGCGCGGAauaua-CGGa-GUCaa-AACG- -5'
6493 3' -47.7 NC_001847.1 + 62461 0.72 0.949327
Target:  5'- uCUGCGCCgcgugGUGUGCCaCAGgc-UGCc -3'
miRNA:   3'- -GGCGCGGaa---UAUACGGaGUCaaaACG- -5'
6493 3' -47.7 NC_001847.1 + 52593 0.72 0.949327
Target:  5'- aCCGCGCgcgGUGcGCUUCGGUagUGCg -3'
miRNA:   3'- -GGCGCGgaaUAUaCGGAGUCAaaACG- -5'
6493 3' -47.7 NC_001847.1 + 50123 0.72 0.953685
Target:  5'- -aGCGCCggcug-GCCUCGGUgaugGCg -3'
miRNA:   3'- ggCGCGGaauauaCGGAGUCAaaa-CG- -5'
6493 3' -47.7 NC_001847.1 + 76795 0.72 0.960119
Target:  5'- cCCGCGCCUggccgcccucUGCUggCAGUUUgUGCa -3'
miRNA:   3'- -GGCGCGGAauau------ACGGa-GUCAAA-ACG- -5'
6493 3' -47.7 NC_001847.1 + 13137 0.71 0.971981
Target:  5'- gCCGCGCCgccugccgcgGCCggCGGUUggGCu -3'
miRNA:   3'- -GGCGCGGaauaua----CGGa-GUCAAaaCG- -5'
6493 3' -47.7 NC_001847.1 + 89288 0.71 0.972864
Target:  5'- gCGCGCCgcggccgagGCCUCGGccgUGCc -3'
miRNA:   3'- gGCGCGGaauaua---CGGAGUCaaaACG- -5'
6493 3' -47.7 NC_001847.1 + 47014 0.71 0.974568
Target:  5'- gCGCGCCUUGUG-GCUcaUCAGcag-GCg -3'
miRNA:   3'- gGCGCGGAAUAUaCGG--AGUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 2615 0.71 0.977233
Target:  5'- gCCGCGCCggagGUGCUUCGGc----- -3'
miRNA:   3'- -GGCGCGGaauaUACGGAGUCaaaacg -5'
6493 3' -47.7 NC_001847.1 + 84078 0.71 0.979213
Target:  5'- cCCGCGCacgaac-GCCUCGGUggccUGCu -3'
miRNA:   3'- -GGCGCGgaauauaCGGAGUCAaa--ACG- -5'
6493 3' -47.7 NC_001847.1 + 15667 0.7 0.981939
Target:  5'- aUG-GCCUUGUGUGCCUCcugcggguAGUacUGCg -3'
miRNA:   3'- gGCgCGGAAUAUACGGAG--------UCAaaACG- -5'
6493 3' -47.7 NC_001847.1 + 97853 0.7 0.981939
Target:  5'- gCGCGCCUUAUAcaaUGCUcCAGUcgacGCc -3'
miRNA:   3'- gGCGCGGAAUAU---ACGGaGUCAaaa-CG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.