Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6493 | 3' | -47.7 | NC_001847.1 | + | 18040 | 1.17 | 0.005637 |
Target: 5'- cCCGCGCCUUAUAUGCCUCAGUUUUGCg -3' miRNA: 3'- -GGCGCGGAAUAUACGGAGUCAAAACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 40096 | 0.89 | 0.241909 |
Target: 5'- gCCGCGCCg---GUGCCUCGGUUgguaggUGCg -3' miRNA: 3'- -GGCGCGGaauaUACGGAGUCAAa-----ACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 46906 | 0.75 | 0.860205 |
Target: 5'- cCCGCGCCgcgccgGCCUCGGcuccgGCg -3' miRNA: 3'- -GGCGCGGaauauaCGGAGUCaaaa-CG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 5966 | 0.75 | 0.883631 |
Target: 5'- gCGCGCgCgcGUAaGCCUCGGcUUUGCg -3' miRNA: 3'- gGCGCG-GaaUAUaCGGAGUCaAAACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 53661 | 0.74 | 0.897988 |
Target: 5'- gCCGUGUCUgGUGUGCUUCgAGgagcUUUGCg -3' miRNA: 3'- -GGCGCGGAaUAUACGGAG-UCa---AAACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 37779 | 0.74 | 0.91754 |
Target: 5'- cUCGCGCCUgaucAUGUGCCUgCGGcugUUUGa -3' miRNA: 3'- -GGCGCGGAa---UAUACGGA-GUCa--AAACg -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 23686 | 0.73 | 0.934654 |
Target: 5'- gUCGCGCgCUUAUAUGUCUUugAGUaggGCg -3' miRNA: 3'- -GGCGCG-GAAUAUACGGAG--UCAaaaCG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 126499 | 0.73 | 0.934654 |
Target: 5'- gUCGCGCgCUUAUAUGUCUUugAGUaggGCg -3' miRNA: 3'- -GGCGCG-GAAUAUACGGAG--UCAaaaCG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 61864 | 0.73 | 0.934654 |
Target: 5'- gCCGCGCCUgccggcGCCcgCGGgggUUGCa -3' miRNA: 3'- -GGCGCGGAauaua-CGGa-GUCaa-AACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 62461 | 0.72 | 0.949327 |
Target: 5'- uCUGCGCCgcgugGUGUGCCaCAGgc-UGCc -3' miRNA: 3'- -GGCGCGGaa---UAUACGGaGUCaaaACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 52593 | 0.72 | 0.949327 |
Target: 5'- aCCGCGCgcgGUGcGCUUCGGUagUGCg -3' miRNA: 3'- -GGCGCGgaaUAUaCGGAGUCAaaACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 50123 | 0.72 | 0.953685 |
Target: 5'- -aGCGCCggcug-GCCUCGGUgaugGCg -3' miRNA: 3'- ggCGCGGaauauaCGGAGUCAaaa-CG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 76795 | 0.72 | 0.960119 |
Target: 5'- cCCGCGCCUggccgcccucUGCUggCAGUUUgUGCa -3' miRNA: 3'- -GGCGCGGAauau------ACGGa-GUCAAA-ACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 13137 | 0.71 | 0.971981 |
Target: 5'- gCCGCGCCgccugccgcgGCCggCGGUUggGCu -3' miRNA: 3'- -GGCGCGGaauaua----CGGa-GUCAAaaCG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 89288 | 0.71 | 0.972864 |
Target: 5'- gCGCGCCgcggccgagGCCUCGGccgUGCc -3' miRNA: 3'- gGCGCGGaauaua---CGGAGUCaaaACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 47014 | 0.71 | 0.974568 |
Target: 5'- gCGCGCCUUGUG-GCUcaUCAGcag-GCg -3' miRNA: 3'- gGCGCGGAAUAUaCGG--AGUCaaaaCG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 2615 | 0.71 | 0.977233 |
Target: 5'- gCCGCGCCggagGUGCUUCGGc----- -3' miRNA: 3'- -GGCGCGGaauaUACGGAGUCaaaacg -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 84078 | 0.71 | 0.979213 |
Target: 5'- cCCGCGCacgaac-GCCUCGGUggccUGCu -3' miRNA: 3'- -GGCGCGgaauauaCGGAGUCAaa--ACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 15667 | 0.7 | 0.981939 |
Target: 5'- aUG-GCCUUGUGUGCCUCcugcggguAGUacUGCg -3' miRNA: 3'- gGCgCGGAAUAUACGGAG--------UCAaaACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 97853 | 0.7 | 0.981939 |
Target: 5'- gCGCGCCUUAUAcaaUGCUcCAGUcgacGCc -3' miRNA: 3'- gGCGCGGAAUAU---ACGGaGUCAaaa-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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