miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6493 3' -47.7 NC_001847.1 + 54613 0.67 0.997721
Target:  5'- cCCGCGCCg---AUGCCgacg---UGCg -3'
miRNA:   3'- -GGCGCGGaauaUACGGagucaaaACG- -5'
6493 3' -47.7 NC_001847.1 + 100287 0.7 0.989116
Target:  5'- aCCGCGCCUgcacuUGCCUUug----GCa -3'
miRNA:   3'- -GGCGCGGAauau-ACGGAGucaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 75140 0.69 0.990503
Target:  5'- cCCGCcgggGCCggcgGUGCuCUCGGUuagguUUUGCa -3'
miRNA:   3'- -GGCG----CGGaauaUACG-GAGUCA-----AAACG- -5'
6493 3' -47.7 NC_001847.1 + 682 0.69 0.991747
Target:  5'- gCCGCGCC-UAUGccaucuugcccUGCCgcaAGUUUaUGCu -3'
miRNA:   3'- -GGCGCGGaAUAU-----------ACGGag-UCAAA-ACG- -5'
6493 3' -47.7 NC_001847.1 + 109088 0.68 0.994472
Target:  5'- gCGCGCCUUuugcuuuUGCCUauuugcgcggcauuUAGUUUUGg -3'
miRNA:   3'- gGCGCGGAAuau----ACGGA--------------GUCAAAACg -5'
6493 3' -47.7 NC_001847.1 + 54664 0.68 0.995495
Target:  5'- -aGCGCUcgAUGgacaGCCUCGGgcggUGCa -3'
miRNA:   3'- ggCGCGGaaUAUa---CGGAGUCaaa-ACG- -5'
6493 3' -47.7 NC_001847.1 + 37978 0.68 0.996172
Target:  5'- gCGCGCCgccc-UGCCUCA-UUaUGCu -3'
miRNA:   3'- gGCGCGGaauauACGGAGUcAAaACG- -5'
6493 3' -47.7 NC_001847.1 + 1181 0.68 0.996595
Target:  5'- cCCgGCGCCUUAUcucgcuauagcuccGUGCgCUCGGUguucuUUUaGCg -3'
miRNA:   3'- -GG-CGCGGAAUA--------------UACG-GAGUCA-----AAA-CG- -5'
6493 3' -47.7 NC_001847.1 + 107329 0.68 0.996764
Target:  5'- uCCGCGUCUUcg--GCCUCGGc---GCc -3'
miRNA:   3'- -GGCGCGGAAuauaCGGAGUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 40654 0.7 0.989116
Target:  5'- gCCGCGCCUcgcg-GCCUuCuGUacUUUGCc -3'
miRNA:   3'- -GGCGCGGAauauaCGGA-GuCA--AAACG- -5'
6493 3' -47.7 NC_001847.1 + 97853 0.7 0.981939
Target:  5'- gCGCGCCUUAUAcaaUGCUcCAGUcgacGCc -3'
miRNA:   3'- gGCGCGGAAUAU---ACGGaGUCAaaa-CG- -5'
6493 3' -47.7 NC_001847.1 + 2615 0.71 0.977233
Target:  5'- gCCGCGCCggagGUGCUUCGGc----- -3'
miRNA:   3'- -GGCGCGGaauaUACGGAGUCaaaacg -5'
6493 3' -47.7 NC_001847.1 + 46906 0.75 0.860205
Target:  5'- cCCGCGCCgcgccgGCCUCGGcuccgGCg -3'
miRNA:   3'- -GGCGCGGaauauaCGGAGUCaaaa-CG- -5'
6493 3' -47.7 NC_001847.1 + 5966 0.75 0.883631
Target:  5'- gCGCGCgCgcGUAaGCCUCGGcUUUGCg -3'
miRNA:   3'- gGCGCG-GaaUAUaCGGAGUCaAAACG- -5'
6493 3' -47.7 NC_001847.1 + 53661 0.74 0.897988
Target:  5'- gCCGUGUCUgGUGUGCUUCgAGgagcUUUGCg -3'
miRNA:   3'- -GGCGCGGAaUAUACGGAG-UCa---AAACG- -5'
6493 3' -47.7 NC_001847.1 + 37779 0.74 0.91754
Target:  5'- cUCGCGCCUgaucAUGUGCCUgCGGcugUUUGa -3'
miRNA:   3'- -GGCGCGGAa---UAUACGGA-GUCa--AAACg -5'
6493 3' -47.7 NC_001847.1 + 126499 0.73 0.934654
Target:  5'- gUCGCGCgCUUAUAUGUCUUugAGUaggGCg -3'
miRNA:   3'- -GGCGCG-GAAUAUACGGAG--UCAaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 50123 0.72 0.953685
Target:  5'- -aGCGCCggcug-GCCUCGGUgaugGCg -3'
miRNA:   3'- ggCGCGGaauauaCGGAGUCAaaa-CG- -5'
6493 3' -47.7 NC_001847.1 + 76795 0.72 0.960119
Target:  5'- cCCGCGCCUggccgcccucUGCUggCAGUUUgUGCa -3'
miRNA:   3'- -GGCGCGGAauau------ACGGa-GUCAAA-ACG- -5'
6493 3' -47.7 NC_001847.1 + 13137 0.71 0.971981
Target:  5'- gCCGCGCCgccugccgcgGCCggCGGUUggGCu -3'
miRNA:   3'- -GGCGCGGaauaua----CGGa-GUCAAaaCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.