Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6493 | 3' | -47.7 | NC_001847.1 | + | 54613 | 0.67 | 0.997721 |
Target: 5'- cCCGCGCCg---AUGCCgacg---UGCg -3' miRNA: 3'- -GGCGCGGaauaUACGGagucaaaACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 100287 | 0.7 | 0.989116 |
Target: 5'- aCCGCGCCUgcacuUGCCUUug----GCa -3' miRNA: 3'- -GGCGCGGAauau-ACGGAGucaaaaCG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 75140 | 0.69 | 0.990503 |
Target: 5'- cCCGCcgggGCCggcgGUGCuCUCGGUuagguUUUGCa -3' miRNA: 3'- -GGCG----CGGaauaUACG-GAGUCA-----AAACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 682 | 0.69 | 0.991747 |
Target: 5'- gCCGCGCC-UAUGccaucuugcccUGCCgcaAGUUUaUGCu -3' miRNA: 3'- -GGCGCGGaAUAU-----------ACGGag-UCAAA-ACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 109088 | 0.68 | 0.994472 |
Target: 5'- gCGCGCCUUuugcuuuUGCCUauuugcgcggcauuUAGUUUUGg -3' miRNA: 3'- gGCGCGGAAuau----ACGGA--------------GUCAAAACg -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 54664 | 0.68 | 0.995495 |
Target: 5'- -aGCGCUcgAUGgacaGCCUCGGgcggUGCa -3' miRNA: 3'- ggCGCGGaaUAUa---CGGAGUCaaa-ACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 37978 | 0.68 | 0.996172 |
Target: 5'- gCGCGCCgccc-UGCCUCA-UUaUGCu -3' miRNA: 3'- gGCGCGGaauauACGGAGUcAAaACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 1181 | 0.68 | 0.996595 |
Target: 5'- cCCgGCGCCUUAUcucgcuauagcuccGUGCgCUCGGUguucuUUUaGCg -3' miRNA: 3'- -GG-CGCGGAAUA--------------UACG-GAGUCA-----AAA-CG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 107329 | 0.68 | 0.996764 |
Target: 5'- uCCGCGUCUUcg--GCCUCGGc---GCc -3' miRNA: 3'- -GGCGCGGAAuauaCGGAGUCaaaaCG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 40654 | 0.7 | 0.989116 |
Target: 5'- gCCGCGCCUcgcg-GCCUuCuGUacUUUGCc -3' miRNA: 3'- -GGCGCGGAauauaCGGA-GuCA--AAACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 97853 | 0.7 | 0.981939 |
Target: 5'- gCGCGCCUUAUAcaaUGCUcCAGUcgacGCc -3' miRNA: 3'- gGCGCGGAAUAU---ACGGaGUCAaaa-CG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 2615 | 0.71 | 0.977233 |
Target: 5'- gCCGCGCCggagGUGCUUCGGc----- -3' miRNA: 3'- -GGCGCGGaauaUACGGAGUCaaaacg -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 46906 | 0.75 | 0.860205 |
Target: 5'- cCCGCGCCgcgccgGCCUCGGcuccgGCg -3' miRNA: 3'- -GGCGCGGaauauaCGGAGUCaaaa-CG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 5966 | 0.75 | 0.883631 |
Target: 5'- gCGCGCgCgcGUAaGCCUCGGcUUUGCg -3' miRNA: 3'- gGCGCG-GaaUAUaCGGAGUCaAAACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 53661 | 0.74 | 0.897988 |
Target: 5'- gCCGUGUCUgGUGUGCUUCgAGgagcUUUGCg -3' miRNA: 3'- -GGCGCGGAaUAUACGGAG-UCa---AAACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 37779 | 0.74 | 0.91754 |
Target: 5'- cUCGCGCCUgaucAUGUGCCUgCGGcugUUUGa -3' miRNA: 3'- -GGCGCGGAa---UAUACGGA-GUCa--AAACg -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 126499 | 0.73 | 0.934654 |
Target: 5'- gUCGCGCgCUUAUAUGUCUUugAGUaggGCg -3' miRNA: 3'- -GGCGCG-GAAUAUACGGAG--UCAaaaCG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 50123 | 0.72 | 0.953685 |
Target: 5'- -aGCGCCggcug-GCCUCGGUgaugGCg -3' miRNA: 3'- ggCGCGGaauauaCGGAGUCAaaa-CG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 76795 | 0.72 | 0.960119 |
Target: 5'- cCCGCGCCUggccgcccucUGCUggCAGUUUgUGCa -3' miRNA: 3'- -GGCGCGGAauau------ACGGa-GUCAAA-ACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 13137 | 0.71 | 0.971981 |
Target: 5'- gCCGCGCCgccugccgcgGCCggCGGUUggGCu -3' miRNA: 3'- -GGCGCGGaauaua----CGGa-GUCAAaaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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