miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6493 3' -47.7 NC_001847.1 + 86680 0.67 0.998876
Target:  5'- gCCGCGCgCUUu--UGCCUCAccuucacgcccucgGUgcuggUGCu -3'
miRNA:   3'- -GGCGCG-GAAuauACGGAGU--------------CAaa---ACG- -5'
6493 3' -47.7 NC_001847.1 + 53575 0.67 0.998807
Target:  5'- gCCGCGCUgggcgacguggAUGCCUU---UUUGCg -3'
miRNA:   3'- -GGCGCGGaaua-------UACGGAGucaAAACG- -5'
6493 3' -47.7 NC_001847.1 + 1426 0.67 0.998708
Target:  5'- cCCGCGCCccgccaggcacUAUuUGCgCUCGGg--UGCa -3'
miRNA:   3'- -GGCGCGGa----------AUAuACG-GAGUCaaaACG- -5'
6493 3' -47.7 NC_001847.1 + 39756 0.67 0.998708
Target:  5'- cCCgGCGCCg-----GCCUCAGagccgGCg -3'
miRNA:   3'- -GG-CGCGGaauauaCGGAGUCaaaa-CG- -5'
6493 3' -47.7 NC_001847.1 + 79103 0.67 0.99843
Target:  5'- gCCGCGCC----GUGCCUguGgaagaagGCc -3'
miRNA:   3'- -GGCGCGGaauaUACGGAguCaaaa---CG- -5'
6493 3' -47.7 NC_001847.1 + 67198 0.67 0.998103
Target:  5'- gCCGCGgC-UGUGUGCCgUC-GUgcUGCg -3'
miRNA:   3'- -GGCGCgGaAUAUACGG-AGuCAaaACG- -5'
6493 3' -47.7 NC_001847.1 + 88389 0.67 0.998103
Target:  5'- aCCGCGCC----AUGCC--GGUUUcGCa -3'
miRNA:   3'- -GGCGCGGaauaUACGGagUCAAAaCG- -5'
6493 3' -47.7 NC_001847.1 + 2194 0.67 0.998103
Target:  5'- gCCGCGCCgcga---CCUCGGggcgGCa -3'
miRNA:   3'- -GGCGCGGaauauacGGAGUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 7711 0.67 0.998103
Target:  5'- gCGCGCCUUGg--GCaUUCAGgcgcaggGCg -3'
miRNA:   3'- gGCGCGGAAUauaCG-GAGUCaaaa---CG- -5'
6493 3' -47.7 NC_001847.1 + 44708 0.67 0.998103
Target:  5'- aCCGCGCgCUUAUuuugGCCUacg---UGCa -3'
miRNA:   3'- -GGCGCG-GAAUAua--CGGAgucaaaACG- -5'
6493 3' -47.7 NC_001847.1 + 105007 0.67 0.998103
Target:  5'- gCCGCGCCgcga---CCUCGGggcgGCa -3'
miRNA:   3'- -GGCGCGGaauauacGGAGUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 16660 0.67 0.998032
Target:  5'- cCCGCGCCUacaggcgcGCC-CGGgccUUGCg -3'
miRNA:   3'- -GGCGCGGAauaua---CGGaGUCaa-AACG- -5'
6493 3' -47.7 NC_001847.1 + 133521 0.67 0.997721
Target:  5'- gCGCGCCgcgGUGcUGCCgCGGcgcagUGCg -3'
miRNA:   3'- gGCGCGGaa-UAU-ACGGaGUCaaa--ACG- -5'
6493 3' -47.7 NC_001847.1 + 30708 0.67 0.997721
Target:  5'- gCGCGCCgcgGUGcUGCCgCGGcgcagUGCg -3'
miRNA:   3'- gGCGCGGaa-UAU-ACGGaGUCaaa--ACG- -5'
6493 3' -47.7 NC_001847.1 + 54613 0.67 0.997721
Target:  5'- cCCGCGCCg---AUGCCgacg---UGCg -3'
miRNA:   3'- -GGCGCGGaauaUACGGagucaaaACG- -5'
6493 3' -47.7 NC_001847.1 + 87602 0.68 0.997277
Target:  5'- cCCGCGCCcgccGUGCUggAGUUUgacaGCg -3'
miRNA:   3'- -GGCGCGGaauaUACGGagUCAAAa---CG- -5'
6493 3' -47.7 NC_001847.1 + 107329 0.68 0.996764
Target:  5'- uCCGCGUCUUcg--GCCUCGGc---GCc -3'
miRNA:   3'- -GGCGCGGAAuauaCGGAGUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 4516 0.68 0.996764
Target:  5'- uCCGCGUCUUcg--GCCUCGGc---GCc -3'
miRNA:   3'- -GGCGCGGAAuauaCGGAGUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 91515 0.68 0.996764
Target:  5'- cCCGCGCCcuguaAUGUGCUUgAGg---GCc -3'
miRNA:   3'- -GGCGCGGaa---UAUACGGAgUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 1181 0.68 0.996595
Target:  5'- cCCgGCGCCUUAUcucgcuauagcuccGUGCgCUCGGUguucuUUUaGCg -3'
miRNA:   3'- -GG-CGCGGAAUA--------------UACG-GAGUCA-----AAA-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.