miRNA display CGI


Results 1 - 20 of 356 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6493 5' -60.4 NC_001847.1 + 31163 0.66 0.681941
Target:  5'- cGGGCgGCgUCGAcGCCGCGCUGGGc- -3'
miRNA:   3'- -CCCGaUGgGGCUcCGGCGUGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 56875 0.66 0.691781
Target:  5'- cGGGCgcgGCCaCG-GGCC-CGCCGgcGAc -3'
miRNA:   3'- -CCCGa--UGGgGCuCCGGcGUGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 130943 0.66 0.701574
Target:  5'- cGGCgacguugGgCCCGAGGaCUGCAgcgacgccggguCCGAGGAc -3'
miRNA:   3'- cCCGa------UgGGGCUCC-GGCGU------------GGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 33786 0.66 0.691781
Target:  5'- aGGGCU-UCgCGGGGCUGCGCgCGGc-- -3'
miRNA:   3'- -CCCGAuGGgGCUCCGGCGUG-GCUucu -5'
6493 5' -60.4 NC_001847.1 + 60864 0.66 0.711312
Target:  5'- aGGGCguccaGCgCgGGgcGGCCGCGCCcggGAAGAg -3'
miRNA:   3'- -CCCGa----UGgGgCU--CCGGCGUGG---CUUCU- -5'
6493 5' -60.4 NC_001847.1 + 130504 0.66 0.691781
Target:  5'- cGGGCUgaggcgcgcgaGCgCCGgcGGGCCGCccgcGCCGAGc- -3'
miRNA:   3'- -CCCGA-----------UGgGGC--UCCGGCG----UGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 120825 0.66 0.700597
Target:  5'- cGGCcccACCgCGAgcagcgggagcggGGCCGCgacGCCGGAGAg -3'
miRNA:   3'- cCCGa--UGGgGCU-------------CCGGCG---UGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 13460 0.66 0.711312
Target:  5'- cGGGCgcGCaCCUGcucGGGCCGCACCc---- -3'
miRNA:   3'- -CCCGa-UG-GGGC---UCCGGCGUGGcuucu -5'
6493 5' -60.4 NC_001847.1 + 64031 0.66 0.701574
Target:  5'- cGGGCUugCCCGcGGUUcacgccuggGCGCUGGAc- -3'
miRNA:   3'- -CCCGAugGGGCuCCGG---------CGUGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 50087 0.66 0.681941
Target:  5'- cGGGCgcgGCCaaGGcuGCCGCGCCGGGc- -3'
miRNA:   3'- -CCCGa--UGGggCUc-CGGCGUGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 115283 0.66 0.711312
Target:  5'- cGGGCUaagccggcGCCCCcGGGCgCGgGCC-AAGGg -3'
miRNA:   3'- -CCCGA--------UGGGGcUCCG-GCgUGGcUUCU- -5'
6493 5' -60.4 NC_001847.1 + 119842 0.66 0.681941
Target:  5'- cGGC--CCCCGAcGCCGUGCCGGu-- -3'
miRNA:   3'- cCCGauGGGGCUcCGGCGUGGCUucu -5'
6493 5' -60.4 NC_001847.1 + 12062 0.66 0.701574
Target:  5'- -cGCUGCggacgCCGAGGCCGCggagcGCCGcGGGu -3'
miRNA:   3'- ccCGAUGg----GGCUCCGGCG-----UGGCuUCU- -5'
6493 5' -60.4 NC_001847.1 + 5783 0.66 0.681941
Target:  5'- cGGCgucuaGCCCCG-GGCCcgGCACCGc--- -3'
miRNA:   3'- cCCGa----UGGGGCuCCGG--CGUGGCuucu -5'
6493 5' -60.4 NC_001847.1 + 97057 0.66 0.69962
Target:  5'- cGGGCUGcuuuCCCCGAccgcggcGGCCGCcgcgcgcagcuuaGCCGcGGc -3'
miRNA:   3'- -CCCGAU----GGGGCU-------CCGGCG-------------UGGCuUCu -5'
6493 5' -60.4 NC_001847.1 + 134551 0.66 0.681941
Target:  5'- cGGaGCgGCCgCGgaGGGCCaggacccgGCGCCGGAGAc -3'
miRNA:   3'- -CC-CGaUGGgGC--UCCGG--------CGUGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 80684 0.66 0.691781
Target:  5'- cGGCUGCgCgCCGGcGGCgGCugCGGcuGGAa -3'
miRNA:   3'- cCCGAUG-G-GGCU-CCGgCGugGCU--UCU- -5'
6493 5' -60.4 NC_001847.1 + 14997 0.66 0.701574
Target:  5'- uGGCaagcGCCCCucGGCCGCGgUGggGc -3'
miRNA:   3'- cCCGa---UGGGGcuCCGGCGUgGCuuCu -5'
6493 5' -60.4 NC_001847.1 + 77637 0.66 0.701574
Target:  5'- cGGCgcgccGCCCgugGAGGCCuucgacgcggGCGCCGAGGu -3'
miRNA:   3'- cCCGa----UGGGg--CUCCGG----------CGUGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 19918 0.66 0.691781
Target:  5'- aGGGCgucGCCgCCGAccuGCCGCACCu---- -3'
miRNA:   3'- -CCCGa--UGG-GGCUc--CGGCGUGGcuucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.