Results 1 - 20 of 356 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6493 | 5' | -60.4 | NC_001847.1 | + | 18078 | 1.1 | 0.00098 |
Target: 5'- gGGGCUACCCCGAGGCCGCACCGAAGAc -3' miRNA: 3'- -CCCGAUGGGGCUCCGGCGUGGCUUCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 59503 | 0.83 | 0.068097 |
Target: 5'- gGGGgUGCgCCGAGGCCGCACCGGc-- -3' miRNA: 3'- -CCCgAUGgGGCUCCGGCGUGGCUucu -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 87412 | 0.81 | 0.103042 |
Target: 5'- cGGGCgggGCCCCGcccGCCGCGCuCGAAGAg -3' miRNA: 3'- -CCCGa--UGGGGCuc-CGGCGUG-GCUUCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 87436 | 0.8 | 0.120076 |
Target: 5'- cGGGCUGgcguUCCCGGcGGCCGCcaacGCCGAGGAc -3' miRNA: 3'- -CCCGAU----GGGGCU-CCGGCG----UGGCUUCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 43799 | 0.8 | 0.122537 |
Target: 5'- cGGGCgcgcuacuacugACgCUCGAcGGCCGCGCCGAAGAa -3' miRNA: 3'- -CCCGa-----------UG-GGGCU-CCGGCGUGGCUUCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 101063 | 0.8 | 0.123159 |
Target: 5'- aGGCcgGCCCCGGGGCCGC-CgCGggGGc -3' miRNA: 3'- cCCGa-UGGGGCUCCGGCGuG-GCuuCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 354 | 0.79 | 0.127598 |
Target: 5'- cGGGCUucgcGCCCCGGGGCCcgccccgcgcgccgcGCGCCGGAc- -3' miRNA: 3'- -CCCGA----UGGGGCUCCGG---------------CGUGGCUUcu -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 103167 | 0.79 | 0.127598 |
Target: 5'- cGGGCUucgcGCCCCGGGGCCcgccccgcgcgccgcGCGCCGGAc- -3' miRNA: 3'- -CCCGA----UGGGGCUCCGG---------------CGUGGCUUcu -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 131808 | 0.78 | 0.166283 |
Target: 5'- uGGcCUACCCgGAGGCCGgCGCCGgcGGc -3' miRNA: 3'- cCC-GAUGGGgCUCCGGC-GUGGCuuCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 28995 | 0.78 | 0.166283 |
Target: 5'- uGGcCUACCCgGAGGCCGgCGCCGgcGGc -3' miRNA: 3'- cCC-GAUGGGgCUCCGGC-GUGGCuuCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 86558 | 0.77 | 0.170432 |
Target: 5'- aGGGggACgCCGAGGaCgGCGCCGAAGAc -3' miRNA: 3'- -CCCgaUGgGGCUCC-GgCGUGGCUUCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 104544 | 0.77 | 0.179009 |
Target: 5'- cGGCgGCCCCGGGGCCGCuACgCGgcGGu -3' miRNA: 3'- cCCGaUGGGGCUCCGGCG-UG-GCuuCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 95375 | 0.76 | 0.199234 |
Target: 5'- cGGCggaccgcgccgccgGCUCUGAGGCCgGCGCCGggGAc -3' miRNA: 3'- cCCGa-------------UGGGGCUCCGG-CGUGGCuuCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 47563 | 0.76 | 0.207069 |
Target: 5'- cGGGgaGCCCgGcGGCCGCgcacgcGCCGAGGAa -3' miRNA: 3'- -CCCgaUGGGgCuCCGGCG------UGGCUUCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 122768 | 0.76 | 0.207069 |
Target: 5'- -cGC-GCCCCGAGGCCGCAgCCGccGAc -3' miRNA: 3'- ccCGaUGGGGCUCCGGCGU-GGCuuCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 63103 | 0.76 | 0.207069 |
Target: 5'- cGGGUacGCCCCGGGGCCGcCGCCGc--- -3' miRNA: 3'- -CCCGa-UGGGGCUCCGGC-GUGGCuucu -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 88538 | 0.75 | 0.227827 |
Target: 5'- -cGCUcgugcGCCgCGAGGCCGCGCCGgcGGg -3' miRNA: 3'- ccCGA-----UGGgGCUCCGGCGUGGCuuCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 58760 | 0.75 | 0.233285 |
Target: 5'- cGGCgccccCCCCGAGGCCGUgaagaggcgACCGggGu -3' miRNA: 3'- cCCGau---GGGGCUCCGGCG---------UGGCuuCu -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 95531 | 0.75 | 0.238852 |
Target: 5'- aGGCUugCCCcuggggcuGGGGCCGCGCCGcAGc -3' miRNA: 3'- cCCGAugGGG--------CUCCGGCGUGGCuUCu -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 52929 | 0.75 | 0.262237 |
Target: 5'- gGGGC-GCCCgCGaAGGCCGUGCCGGuuaaGGAa -3' miRNA: 3'- -CCCGaUGGG-GC-UCCGGCGUGGCU----UCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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