miRNA display CGI


Results 1 - 20 of 356 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6493 5' -60.4 NC_001847.1 + 18078 1.1 0.00098
Target:  5'- gGGGCUACCCCGAGGCCGCACCGAAGAc -3'
miRNA:   3'- -CCCGAUGGGGCUCCGGCGUGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 59503 0.83 0.068097
Target:  5'- gGGGgUGCgCCGAGGCCGCACCGGc-- -3'
miRNA:   3'- -CCCgAUGgGGCUCCGGCGUGGCUucu -5'
6493 5' -60.4 NC_001847.1 + 87412 0.81 0.103042
Target:  5'- cGGGCgggGCCCCGcccGCCGCGCuCGAAGAg -3'
miRNA:   3'- -CCCGa--UGGGGCuc-CGGCGUG-GCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 87436 0.8 0.120076
Target:  5'- cGGGCUGgcguUCCCGGcGGCCGCcaacGCCGAGGAc -3'
miRNA:   3'- -CCCGAU----GGGGCU-CCGGCG----UGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 43799 0.8 0.122537
Target:  5'- cGGGCgcgcuacuacugACgCUCGAcGGCCGCGCCGAAGAa -3'
miRNA:   3'- -CCCGa-----------UG-GGGCU-CCGGCGUGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 101063 0.8 0.123159
Target:  5'- aGGCcgGCCCCGGGGCCGC-CgCGggGGc -3'
miRNA:   3'- cCCGa-UGGGGCUCCGGCGuG-GCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 354 0.79 0.127598
Target:  5'- cGGGCUucgcGCCCCGGGGCCcgccccgcgcgccgcGCGCCGGAc- -3'
miRNA:   3'- -CCCGA----UGGGGCUCCGG---------------CGUGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 103167 0.79 0.127598
Target:  5'- cGGGCUucgcGCCCCGGGGCCcgccccgcgcgccgcGCGCCGGAc- -3'
miRNA:   3'- -CCCGA----UGGGGCUCCGG---------------CGUGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 131808 0.78 0.166283
Target:  5'- uGGcCUACCCgGAGGCCGgCGCCGgcGGc -3'
miRNA:   3'- cCC-GAUGGGgCUCCGGC-GUGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 28995 0.78 0.166283
Target:  5'- uGGcCUACCCgGAGGCCGgCGCCGgcGGc -3'
miRNA:   3'- cCC-GAUGGGgCUCCGGC-GUGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 86558 0.77 0.170432
Target:  5'- aGGGggACgCCGAGGaCgGCGCCGAAGAc -3'
miRNA:   3'- -CCCgaUGgGGCUCC-GgCGUGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 104544 0.77 0.179009
Target:  5'- cGGCgGCCCCGGGGCCGCuACgCGgcGGu -3'
miRNA:   3'- cCCGaUGGGGCUCCGGCG-UG-GCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 95375 0.76 0.199234
Target:  5'- cGGCggaccgcgccgccgGCUCUGAGGCCgGCGCCGggGAc -3'
miRNA:   3'- cCCGa-------------UGGGGCUCCGG-CGUGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 47563 0.76 0.207069
Target:  5'- cGGGgaGCCCgGcGGCCGCgcacgcGCCGAGGAa -3'
miRNA:   3'- -CCCgaUGGGgCuCCGGCG------UGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 122768 0.76 0.207069
Target:  5'- -cGC-GCCCCGAGGCCGCAgCCGccGAc -3'
miRNA:   3'- ccCGaUGGGGCUCCGGCGU-GGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 63103 0.76 0.207069
Target:  5'- cGGGUacGCCCCGGGGCCGcCGCCGc--- -3'
miRNA:   3'- -CCCGa-UGGGGCUCCGGC-GUGGCuucu -5'
6493 5' -60.4 NC_001847.1 + 88538 0.75 0.227827
Target:  5'- -cGCUcgugcGCCgCGAGGCCGCGCCGgcGGg -3'
miRNA:   3'- ccCGA-----UGGgGCUCCGGCGUGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 58760 0.75 0.233285
Target:  5'- cGGCgccccCCCCGAGGCCGUgaagaggcgACCGggGu -3'
miRNA:   3'- cCCGau---GGGGCUCCGGCG---------UGGCuuCu -5'
6493 5' -60.4 NC_001847.1 + 95531 0.75 0.238852
Target:  5'- aGGCUugCCCcuggggcuGGGGCCGCGCCGcAGc -3'
miRNA:   3'- cCCGAugGGG--------CUCCGGCGUGGCuUCu -5'
6493 5' -60.4 NC_001847.1 + 52929 0.75 0.262237
Target:  5'- gGGGC-GCCCgCGaAGGCCGUGCCGGuuaaGGAa -3'
miRNA:   3'- -CCCGaUGGG-GC-UCCGGCGUGGCU----UCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.