miRNA display CGI


Results 1 - 20 of 356 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6493 5' -60.4 NC_001847.1 + 237 0.67 0.632318
Target:  5'- cGGGCcucgcGCCCCGAcGCCcgGCGCCcAGGGg -3'
miRNA:   3'- -CCCGa----UGGGGCUcCGG--CGUGGcUUCU- -5'
6493 5' -60.4 NC_001847.1 + 299 0.67 0.652221
Target:  5'- cGGGCgccguCCCCGc-GCCcCGCCGGAGc -3'
miRNA:   3'- -CCCGau---GGGGCucCGGcGUGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 354 0.79 0.127598
Target:  5'- cGGGCUucgcGCCCCGGGGCCcgccccgcgcgccgcGCGCCGGAc- -3'
miRNA:   3'- -CCCGA----UGGGGCUCCGG---------------CGUGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 886 0.67 0.632318
Target:  5'- cGGCccGCgCCGGGGCCGCcgcgGCCGccGGc -3'
miRNA:   3'- cCCGa-UGgGGCUCCGGCG----UGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 934 0.69 0.543533
Target:  5'- cGGgaAgCCCGAGcCCGCGcCCGggGAc -3'
miRNA:   3'- cCCgaUgGGGCUCcGGCGU-GGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 1151 0.69 0.553249
Target:  5'- cGGCgcgcgGCUCCGGcagcgcGGCCGCGCaGAAGGc -3'
miRNA:   3'- cCCGa----UGGGGCU------CCGGCGUGgCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 1326 0.68 0.571846
Target:  5'- cGGCU-CCCCGAGccccagcGCCGCGCCc---- -3'
miRNA:   3'- cCCGAuGGGGCUC-------CGGCGUGGcuucu -5'
6493 5' -60.4 NC_001847.1 + 2248 0.67 0.662153
Target:  5'- cGGGCgugugguaguCCCCG-GGCgGCACgCGgcGGa -3'
miRNA:   3'- -CCCGau--------GGGGCuCCGgCGUG-GCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 2543 0.67 0.642273
Target:  5'- cGGCgcUCCCGccGCCGgGCCGggGc -3'
miRNA:   3'- cCCGauGGGGCucCGGCgUGGCuuCu -5'
6493 5' -60.4 NC_001847.1 + 2577 0.71 0.418849
Target:  5'- cGGGCgccugcgcgGCCgCCGcGGCCGCacgcgagcccgccgcGCCGGAGGu -3'
miRNA:   3'- -CCCGa--------UGG-GGCuCCGGCG---------------UGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 2971 0.72 0.390448
Target:  5'- cGGCgcgcagcGCCgCCGGGGCCGgCGCUGGAGc -3'
miRNA:   3'- cCCGa------UGG-GGCUCCGGC-GUGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 3011 0.67 0.662153
Target:  5'- -cGCUccACCgCGucgcGGGCCGCGCCGAGc- -3'
miRNA:   3'- ccCGA--UGGgGC----UCCGGCGUGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 3957 0.68 0.592567
Target:  5'- gGGGCgccguCUCCGGcGGCgaggGCGCCGggGGc -3'
miRNA:   3'- -CCCGau---GGGGCU-CCGg---CGUGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 4278 0.7 0.477375
Target:  5'- uGGCgGCCaCGAGGCgCGCGCCGGc-- -3'
miRNA:   3'- cCCGaUGGgGCUCCG-GCGUGGCUucu -5'
6493 5' -60.4 NC_001847.1 + 4892 0.68 0.582681
Target:  5'- aGGGC--CCCCGc-GCCGCugCGAAcGAc -3'
miRNA:   3'- -CCCGauGGGGCucCGGCGugGCUU-CU- -5'
6493 5' -60.4 NC_001847.1 + 5729 0.66 0.730587
Target:  5'- aGGGCUuaccuGCCCgCGGGGCgGUucGCCGccAAGc -3'
miRNA:   3'- -CCCGA-----UGGG-GCUCCGgCG--UGGC--UUCu -5'
6493 5' -60.4 NC_001847.1 + 5783 0.66 0.681941
Target:  5'- cGGCgucuaGCCCCG-GGCCcgGCACCGc--- -3'
miRNA:   3'- cCCGa----UGGGGCuCCGG--CGUGGCuucu -5'
6493 5' -60.4 NC_001847.1 + 6340 0.71 0.441395
Target:  5'- cGGgUGCCCCGGcGGCaacCGCGCCGcGGGc -3'
miRNA:   3'- cCCgAUGGGGCU-CCG---GCGUGGCuUCU- -5'
6493 5' -60.4 NC_001847.1 + 7760 0.74 0.28745
Target:  5'- aGGGCaAgCCCGAcGGCCGUugguGCCGAGGc -3'
miRNA:   3'- -CCCGaUgGGGCU-CCGGCG----UGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 8300 0.68 0.601488
Target:  5'- aGGGCU-CCCCGggGGGCCaggcugucgGCAggacgaucagcccCCGAAGGu -3'
miRNA:   3'- -CCCGAuGGGGC--UCCGG---------CGU-------------GGCUUCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.