Results 1 - 20 of 356 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6493 | 5' | -60.4 | NC_001847.1 | + | 237 | 0.67 | 0.632318 |
Target: 5'- cGGGCcucgcGCCCCGAcGCCcgGCGCCcAGGGg -3' miRNA: 3'- -CCCGa----UGGGGCUcCGG--CGUGGcUUCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 299 | 0.67 | 0.652221 |
Target: 5'- cGGGCgccguCCCCGc-GCCcCGCCGGAGc -3' miRNA: 3'- -CCCGau---GGGGCucCGGcGUGGCUUCu -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 354 | 0.79 | 0.127598 |
Target: 5'- cGGGCUucgcGCCCCGGGGCCcgccccgcgcgccgcGCGCCGGAc- -3' miRNA: 3'- -CCCGA----UGGGGCUCCGG---------------CGUGGCUUcu -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 886 | 0.67 | 0.632318 |
Target: 5'- cGGCccGCgCCGGGGCCGCcgcgGCCGccGGc -3' miRNA: 3'- cCCGa-UGgGGCUCCGGCG----UGGCuuCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 934 | 0.69 | 0.543533 |
Target: 5'- cGGgaAgCCCGAGcCCGCGcCCGggGAc -3' miRNA: 3'- cCCgaUgGGGCUCcGGCGU-GGCuuCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 1151 | 0.69 | 0.553249 |
Target: 5'- cGGCgcgcgGCUCCGGcagcgcGGCCGCGCaGAAGGc -3' miRNA: 3'- cCCGa----UGGGGCU------CCGGCGUGgCUUCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 1326 | 0.68 | 0.571846 |
Target: 5'- cGGCU-CCCCGAGccccagcGCCGCGCCc---- -3' miRNA: 3'- cCCGAuGGGGCUC-------CGGCGUGGcuucu -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 2248 | 0.67 | 0.662153 |
Target: 5'- cGGGCgugugguaguCCCCG-GGCgGCACgCGgcGGa -3' miRNA: 3'- -CCCGau--------GGGGCuCCGgCGUG-GCuuCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 2543 | 0.67 | 0.642273 |
Target: 5'- cGGCgcUCCCGccGCCGgGCCGggGc -3' miRNA: 3'- cCCGauGGGGCucCGGCgUGGCuuCu -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 2577 | 0.71 | 0.418849 |
Target: 5'- cGGGCgccugcgcgGCCgCCGcGGCCGCacgcgagcccgccgcGCCGGAGGu -3' miRNA: 3'- -CCCGa--------UGG-GGCuCCGGCG---------------UGGCUUCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 2971 | 0.72 | 0.390448 |
Target: 5'- cGGCgcgcagcGCCgCCGGGGCCGgCGCUGGAGc -3' miRNA: 3'- cCCGa------UGG-GGCUCCGGC-GUGGCUUCu -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 3011 | 0.67 | 0.662153 |
Target: 5'- -cGCUccACCgCGucgcGGGCCGCGCCGAGc- -3' miRNA: 3'- ccCGA--UGGgGC----UCCGGCGUGGCUUcu -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 3957 | 0.68 | 0.592567 |
Target: 5'- gGGGCgccguCUCCGGcGGCgaggGCGCCGggGGc -3' miRNA: 3'- -CCCGau---GGGGCU-CCGg---CGUGGCuuCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 4278 | 0.7 | 0.477375 |
Target: 5'- uGGCgGCCaCGAGGCgCGCGCCGGc-- -3' miRNA: 3'- cCCGaUGGgGCUCCG-GCGUGGCUucu -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 4892 | 0.68 | 0.582681 |
Target: 5'- aGGGC--CCCCGc-GCCGCugCGAAcGAc -3' miRNA: 3'- -CCCGauGGGGCucCGGCGugGCUU-CU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 5729 | 0.66 | 0.730587 |
Target: 5'- aGGGCUuaccuGCCCgCGGGGCgGUucGCCGccAAGc -3' miRNA: 3'- -CCCGA-----UGGG-GCUCCGgCG--UGGC--UUCu -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 5783 | 0.66 | 0.681941 |
Target: 5'- cGGCgucuaGCCCCG-GGCCcgGCACCGc--- -3' miRNA: 3'- cCCGa----UGGGGCuCCGG--CGUGGCuucu -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 6340 | 0.71 | 0.441395 |
Target: 5'- cGGgUGCCCCGGcGGCaacCGCGCCGcGGGc -3' miRNA: 3'- cCCgAUGGGGCU-CCG---GCGUGGCuUCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 7760 | 0.74 | 0.28745 |
Target: 5'- aGGGCaAgCCCGAcGGCCGUugguGCCGAGGc -3' miRNA: 3'- -CCCGaUgGGGCU-CCGGCG----UGGCUUCu -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 8300 | 0.68 | 0.601488 |
Target: 5'- aGGGCU-CCCCGggGGGCCaggcugucgGCAggacgaucagcccCCGAAGGu -3' miRNA: 3'- -CCCGAuGGGGC--UCCGG---------CGU-------------GGCUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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