miRNA display CGI


Results 1 - 20 of 356 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6493 5' -60.4 NC_001847.1 + 34633 0.73 0.320886
Target:  5'- cGGCgccugcGCgCCGAGGCCgagcggcGCGCCGAGGGg -3'
miRNA:   3'- cCCGa-----UGgGGCUCCGG-------CGUGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 83571 0.74 0.28745
Target:  5'- cGGCUGCCCCGGcGCCGCggaagcGCUGgcGAg -3'
miRNA:   3'- cCCGAUGGGGCUcCGGCG------UGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 101386 0.74 0.28745
Target:  5'- gGGGCUGCCCgCGGcGCCGCcggcaAUCGggGGu -3'
miRNA:   3'- -CCCGAUGGG-GCUcCGGCG-----UGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 11309 0.74 0.294044
Target:  5'- uGGGCgcgcCCgCCGAGGCCggcgggcggcugGCGCCGGAGc -3'
miRNA:   3'- -CCCGau--GG-GGCUCCGG------------CGUGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 115051 0.74 0.294044
Target:  5'- cGGGCUAgCgauggCCG-GGCCGCGCCGcGGGAg -3'
miRNA:   3'- -CCCGAUgG-----GGCuCCGGCGUGGC-UUCU- -5'
6493 5' -60.4 NC_001847.1 + 130909 0.74 0.300756
Target:  5'- gGGGCggcggUGCCCuCGGGGCCaGgACCGAGGc -3'
miRNA:   3'- -CCCG-----AUGGG-GCUCCGG-CgUGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 112768 0.73 0.314532
Target:  5'- cGGGCgcuucUGCCCCGAGGacuggCGCcCCGAGGc -3'
miRNA:   3'- -CCCG-----AUGGGGCUCCg----GCGuGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 122020 0.73 0.314532
Target:  5'- cGGGgUGCUgaUCGcGGCCGCAgCCGAGGAg -3'
miRNA:   3'- -CCCgAUGG--GGCuCCGGCGU-GGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 130616 0.73 0.314532
Target:  5'- cGGGg-GCCaCCGAGGgCGCcgagGCCGAAGAc -3'
miRNA:   3'- -CCCgaUGG-GGCUCCgGCG----UGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 7760 0.74 0.28745
Target:  5'- aGGGCaAgCCCGAcGGCCGUugguGCCGAGGc -3'
miRNA:   3'- -CCCGaUgGGGCU-CCGGCG----UGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 76397 0.74 0.28745
Target:  5'- gGGGggGCgCCgGGGGCCGCGgCGggGGc -3'
miRNA:   3'- -CCCgaUG-GGgCUCCGGCGUgGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 16164 0.74 0.274612
Target:  5'- gGGGCgaccGCCCCGuuGGCCGCGgaccCCGAaucGGAa -3'
miRNA:   3'- -CCCGa---UGGGGCu-CCGGCGU----GGCU---UCU- -5'
6493 5' -60.4 NC_001847.1 + 87412 0.81 0.103042
Target:  5'- cGGGCgggGCCCCGcccGCCGCGCuCGAAGAg -3'
miRNA:   3'- -CCCGa--UGGGGCuc-CGGCGUG-GCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 101063 0.8 0.123159
Target:  5'- aGGCcgGCCCCGGGGCCGC-CgCGggGGc -3'
miRNA:   3'- cCCGa-UGGGGCUCCGGCGuG-GCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 103167 0.79 0.127598
Target:  5'- cGGGCUucgcGCCCCGGGGCCcgccccgcgcgccgcGCGCCGGAc- -3'
miRNA:   3'- -CCCGA----UGGGGCUCCGG---------------CGUGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 131808 0.78 0.166283
Target:  5'- uGGcCUACCCgGAGGCCGgCGCCGgcGGc -3'
miRNA:   3'- cCC-GAUGGGgCUCCGGC-GUGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 86558 0.77 0.170432
Target:  5'- aGGGggACgCCGAGGaCgGCGCCGAAGAc -3'
miRNA:   3'- -CCCgaUGgGGCUCC-GgCGUGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 95375 0.76 0.199234
Target:  5'- cGGCggaccgcgccgccgGCUCUGAGGCCgGCGCCGggGAc -3'
miRNA:   3'- cCCGa-------------UGGGGCUCCGG-CGUGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 47563 0.76 0.207069
Target:  5'- cGGGgaGCCCgGcGGCCGCgcacgcGCCGAGGAa -3'
miRNA:   3'- -CCCgaUGGGgCuCCGGCG------UGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 122768 0.76 0.207069
Target:  5'- -cGC-GCCCCGAGGCCGCAgCCGccGAc -3'
miRNA:   3'- ccCGaUGGGGCUCCGGCGU-GGCuuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.