miRNA display CGI


Results 21 - 40 of 356 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6493 5' -60.4 NC_001847.1 + 130795 0.66 0.720021
Target:  5'- aGGCgGCCgCGGccggggcggaggcGGCCGCgGCCGAAGc -3'
miRNA:   3'- cCCGaUGGgGCU-------------CCGGCG-UGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 27982 0.66 0.720021
Target:  5'- aGGCgGCCgCGGccggggcggaggcGGCCGCgGCCGAAGc -3'
miRNA:   3'- cCCGaUGGgGCU-------------CCGGCG-UGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 86619 0.66 0.71519
Target:  5'- uGGCcGCgCCGcguaagcgugugggcGGGCCGCGCCGccccGGAg -3'
miRNA:   3'- cCCGaUGgGGC---------------UCCGGCGUGGCu---UCU- -5'
6493 5' -60.4 NC_001847.1 + 116799 0.66 0.711312
Target:  5'- cGGCUGCCgCCGAcGGUaaCGCGCCu---- -3'
miRNA:   3'- cCCGAUGG-GGCU-CCG--GCGUGGcuucu -5'
6493 5' -60.4 NC_001847.1 + 78998 0.66 0.711312
Target:  5'- cGGCUgcugagccACCCCgGAGGCUGCGCgGc--- -3'
miRNA:   3'- cCCGA--------UGGGG-CUCCGGCGUGgCuucu -5'
6493 5' -60.4 NC_001847.1 + 60864 0.66 0.711312
Target:  5'- aGGGCguccaGCgCgGGgcGGCCGCGCCcggGAAGAg -3'
miRNA:   3'- -CCCGa----UGgGgCU--CCGGCGUGG---CUUCU- -5'
6493 5' -60.4 NC_001847.1 + 115283 0.66 0.711312
Target:  5'- cGGGCUaagccggcGCCCCcGGGCgCGgGCC-AAGGg -3'
miRNA:   3'- -CCCGA--------UGGGGcUCCG-GCgUGGcUUCU- -5'
6493 5' -60.4 NC_001847.1 + 80400 0.66 0.711312
Target:  5'- uGGC-GCUUgGGGGCCGCAacggcaaagUCGAGGAa -3'
miRNA:   3'- cCCGaUGGGgCUCCGGCGU---------GGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 13460 0.66 0.711312
Target:  5'- cGGGCgcGCaCCUGcucGGGCCGCACCc---- -3'
miRNA:   3'- -CCCGa-UG-GGGC---UCCGGCGUGGcuucu -5'
6493 5' -60.4 NC_001847.1 + 125313 0.66 0.701574
Target:  5'- aGGGC-GCCuuGGGcguuuucggaGCCGCGCUGAAc- -3'
miRNA:   3'- -CCCGaUGGggCUC----------CGGCGUGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 14997 0.66 0.701574
Target:  5'- uGGCaagcGCCCCucGGCCGCGgUGggGc -3'
miRNA:   3'- cCCGa---UGGGGcuCCGGCGUgGCuuCu -5'
6493 5' -60.4 NC_001847.1 + 12062 0.66 0.701574
Target:  5'- -cGCUGCggacgCCGAGGCCGCggagcGCCGcGGGu -3'
miRNA:   3'- ccCGAUGg----GGCUCCGGCG-----UGGCuUCU- -5'
6493 5' -60.4 NC_001847.1 + 67072 0.66 0.701574
Target:  5'- cGGCguucGCCCCGccgcAGG-CGCGCCGcGAGGc -3'
miRNA:   3'- cCCGa---UGGGGC----UCCgGCGUGGC-UUCU- -5'
6493 5' -60.4 NC_001847.1 + 28130 0.66 0.701574
Target:  5'- cGGCgacguugGgCCCGAGGaCUGCAgcgacgccggguCCGAGGAc -3'
miRNA:   3'- cCCGa------UgGGGCUCC-GGCGU------------GGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 64031 0.66 0.701574
Target:  5'- cGGGCUugCCCGcGGUUcacgccuggGCGCUGGAc- -3'
miRNA:   3'- -CCCGAugGGGCuCCGG---------CGUGGCUUcu -5'
6493 5' -60.4 NC_001847.1 + 130943 0.66 0.701574
Target:  5'- cGGCgacguugGgCCCGAGGaCUGCAgcgacgccggguCCGAGGAc -3'
miRNA:   3'- cCCGa------UgGGGCUCC-GGCGU------------GGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 77637 0.66 0.701574
Target:  5'- cGGCgcgccGCCCgugGAGGCCuucgacgcggGCGCCGAGGu -3'
miRNA:   3'- cCCGa----UGGGg--CUCCGG----------CGUGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 120825 0.66 0.700597
Target:  5'- cGGCcccACCgCGAgcagcgggagcggGGCCGCgacGCCGGAGAg -3'
miRNA:   3'- cCCGa--UGGgGCU-------------CCGGCG---UGGCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 97057 0.66 0.69962
Target:  5'- cGGGCUGcuuuCCCCGAccgcggcGGCCGCcgcgcgcagcuuaGCCGcGGc -3'
miRNA:   3'- -CCCGAU----GGGGCU-------CCGGCG-------------UGGCuUCu -5'
6493 5' -60.4 NC_001847.1 + 105630 0.66 0.695705
Target:  5'- cGGGCgaGCUCUGcGGCCGaagcgccgcccgcgGCCGGAGAg -3'
miRNA:   3'- -CCCGa-UGGGGCuCCGGCg-------------UGGCUUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.