miRNA display CGI


Results 61 - 80 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 16617 0.67 0.739614
Target:  5'- gCGugGucuuuGGGgGGGGgcGCGGCgGCu -3'
miRNA:   3'- aGUugUu----CCCgCCCCuuCGUCGgCGu -5'
6494 5' -58.2 NC_001847.1 + 15009 0.67 0.739614
Target:  5'- cUCGGCcgcGGUGGGGccGCgcgAGCCGCGg -3'
miRNA:   3'- -AGUUGuucCCGCCCCuuCG---UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 42986 0.67 0.739614
Target:  5'- gCAACAAcgccGGGaacgccgcCGGGGggGCgcgccgGGCCGCc -3'
miRNA:   3'- aGUUGUU----CCC--------GCCCCuuCG------UCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 132603 0.67 0.729784
Target:  5'- cCGGCcc-GGCGGcGGGAGC-GCCGCc -3'
miRNA:   3'- aGUUGuucCCGCC-CCUUCGuCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 100882 0.67 0.699822
Target:  5'- gCGGCAGGGGCGcggccggcGGGAgacggggucggGGCucggguggaaauAGCCGCGg -3'
miRNA:   3'- aGUUGUUCCCGC--------CCCU-----------UCG------------UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 35535 0.67 0.729784
Target:  5'- cUCGGCGAGGucGUGGcugccGAGGCGGCgCGCGa -3'
miRNA:   3'- -AGUUGUUCC--CGCCc----CUUCGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 3311 0.67 0.729784
Target:  5'- uUCAGguAcaGCGGGuAGGCGGCCGCGc -3'
miRNA:   3'- -AGUUguUccCGCCCcUUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 131026 0.67 0.699822
Target:  5'- aCGAUggGGGCGaggcccgggaGGGGAGCAccgacGCCGaCGc -3'
miRNA:   3'- aGUUGuuCCCGC----------CCCUUCGU-----CGGC-GU- -5'
6494 5' -58.2 NC_001847.1 + 122015 0.67 0.709879
Target:  5'- gCGACcGGGGUGcuGAucGCGGCCGCAg -3'
miRNA:   3'- aGUUGuUCCCGCccCUu-CGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 58860 0.67 0.708876
Target:  5'- --cGCAccuacccGGGGCGGGGcAGGUAcuGCUGCGg -3'
miRNA:   3'- aguUGU-------UCCCGCCCC-UUCGU--CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 55455 0.67 0.739614
Target:  5'- -uGGCGccGGCGGGGc-GCGcGCCGCGc -3'
miRNA:   3'- agUUGUucCCGCCCCuuCGU-CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 76656 0.67 0.689708
Target:  5'- ---cCGAGGGCGGGGAGgGC-GCCu-- -3'
miRNA:   3'- aguuGUUCCCGCCCCUU-CGuCGGcgu -5'
6494 5' -58.2 NC_001847.1 + 132796 0.67 0.699822
Target:  5'- gCGGCcGGGccggcGCGGcGGGAGCcGCCGCu -3'
miRNA:   3'- aGUUGuUCC-----CGCC-CCUUCGuCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 20012 0.67 0.699822
Target:  5'- gCAGCGcacuuccaauAGGGCGGcccuGCGGCCGCc -3'
miRNA:   3'- aGUUGU----------UCCCGCCccuuCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 31298 0.67 0.699822
Target:  5'- -aGGCGGGcGCGGGGAgcgGGCucuGCUGCGu -3'
miRNA:   3'- agUUGUUCcCGCCCCU---UCGu--CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 72400 0.67 0.729784
Target:  5'- -gGACGcGGGCcccgacgcGGGGAcGGCcacGGCCGCAa -3'
miRNA:   3'- agUUGUuCCCG--------CCCCU-UCG---UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 129136 0.67 0.739614
Target:  5'- -gGAgAAGGGUGaGGG--GCGGCCGUg -3'
miRNA:   3'- agUUgUUCCCGC-CCCuuCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 35441 0.67 0.739614
Target:  5'- -gAGCAcGGuGCGGcGcGAcGCGGCCGCGg -3'
miRNA:   3'- agUUGUuCC-CGCC-C-CUuCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 131439 0.67 0.739614
Target:  5'- gCGGCGGccGCGGGGcccGCGGCCGUg -3'
miRNA:   3'- aGUUGUUccCGCCCCuu-CGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 108355 0.67 0.709879
Target:  5'- cUCGcACcGGcGGCGGcGGcAGCAGCgGCAg -3'
miRNA:   3'- -AGU-UGuUC-CCGCC-CCuUCGUCGgCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.