Results 81 - 100 of 313 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6494 | 5' | -58.2 | NC_001847.1 | + | 22377 | 0.67 | 0.689708 |
Target: 5'- -gGACGAGGcccccGCGGGGccGgGGUCGCGa -3' miRNA: 3'- agUUGUUCC-----CGCCCCuuCgUCGGCGU- -5' |
|||||||
6494 | 5' | -58.2 | NC_001847.1 | + | 128192 | 0.67 | 0.689708 |
Target: 5'- gCGGCGgcAGGGCGGaGGggGa--CCGCGg -3' miRNA: 3'- aGUUGU--UCCCGCC-CCuuCgucGGCGU- -5' |
|||||||
6494 | 5' | -58.2 | NC_001847.1 | + | 76656 | 0.67 | 0.689708 |
Target: 5'- ---cCGAGGGCGGGGAGgGC-GCCu-- -3' miRNA: 3'- aguuGUUCCCGCCCCUU-CGuCGGcgu -5' |
|||||||
6494 | 5' | -58.2 | NC_001847.1 | + | 111807 | 0.67 | 0.689708 |
Target: 5'- -aGACGGGGGUGGGGGcugGGUGGgCGgAg -3' miRNA: 3'- agUUGUUCCCGCCCCU---UCGUCgGCgU- -5' |
|||||||
6494 | 5' | -58.2 | NC_001847.1 | + | 101148 | 0.67 | 0.699822 |
Target: 5'- --cGCGGGGGCuGGGGccGgGGCCGgGg -3' miRNA: 3'- aguUGUUCCCG-CCCCuuCgUCGGCgU- -5' |
|||||||
6494 | 5' | -58.2 | NC_001847.1 | + | 131026 | 0.67 | 0.699822 |
Target: 5'- aCGAUggGGGCGaggcccgggaGGGGAGCAccgacGCCGaCGc -3' miRNA: 3'- aGUUGuuCCCGC----------CCCUUCGU-----CGGC-GU- -5' |
|||||||
6494 | 5' | -58.2 | NC_001847.1 | + | 55455 | 0.67 | 0.739614 |
Target: 5'- -uGGCGccGGCGGGGc-GCGcGCCGCGc -3' miRNA: 3'- agUUGUucCCGCCCCuuCGU-CGGCGU- -5' |
|||||||
6494 | 5' | -58.2 | NC_001847.1 | + | 129136 | 0.67 | 0.739614 |
Target: 5'- -gGAgAAGGGUGaGGG--GCGGCCGUg -3' miRNA: 3'- agUUgUUCCCGC-CCCuuCGUCGGCGu -5' |
|||||||
6494 | 5' | -58.2 | NC_001847.1 | + | 35441 | 0.67 | 0.739614 |
Target: 5'- -gAGCAcGGuGCGGcGcGAcGCGGCCGCGg -3' miRNA: 3'- agUUGUuCC-CGCC-C-CUuCGUCGGCGU- -5' |
|||||||
6494 | 5' | -58.2 | NC_001847.1 | + | 131439 | 0.67 | 0.739614 |
Target: 5'- gCGGCGGccGCGGGGcccGCGGCCGUg -3' miRNA: 3'- aGUUGUUccCGCCCCuu-CGUCGGCGu -5' |
|||||||
6494 | 5' | -58.2 | NC_001847.1 | + | 35248 | 0.67 | 0.739614 |
Target: 5'- cCGGCGGGcGcGCGGcGGAGauCAGCCGCGc -3' miRNA: 3'- aGUUGUUC-C-CGCC-CCUUc-GUCGGCGU- -5' |
|||||||
6494 | 5' | -58.2 | NC_001847.1 | + | 16617 | 0.67 | 0.739614 |
Target: 5'- gCGugGucuuuGGGgGGGGgcGCGGCgGCu -3' miRNA: 3'- aGUugUu----CCCgCCCCuuCGUCGgCGu -5' |
|||||||
6494 | 5' | -58.2 | NC_001847.1 | + | 15009 | 0.67 | 0.739614 |
Target: 5'- cUCGGCcgcGGUGGGGccGCgcgAGCCGCGg -3' miRNA: 3'- -AGUUGuucCCGCCCCuuCG---UCGGCGU- -5' |
|||||||
6494 | 5' | -58.2 | NC_001847.1 | + | 42986 | 0.67 | 0.739614 |
Target: 5'- gCAACAAcgccGGGaacgccgcCGGGGggGCgcgccgGGCCGCc -3' miRNA: 3'- aGUUGUU----CCC--------GCCCCuuCG------UCGGCGu -5' |
|||||||
6494 | 5' | -58.2 | NC_001847.1 | + | 132603 | 0.67 | 0.729784 |
Target: 5'- cCGGCcc-GGCGGcGGGAGC-GCCGCc -3' miRNA: 3'- aGUUGuucCCGCC-CCUUCGuCGGCGu -5' |
|||||||
6494 | 5' | -58.2 | NC_001847.1 | + | 72400 | 0.67 | 0.729784 |
Target: 5'- -gGACGcGGGCcccgacgcGGGGAcGGCcacGGCCGCAa -3' miRNA: 3'- agUUGUuCCCG--------CCCCU-UCG---UCGGCGU- -5' |
|||||||
6494 | 5' | -58.2 | NC_001847.1 | + | 54386 | 0.67 | 0.729784 |
Target: 5'- gCGGCGGGcGGCcgcGGGcGAGGCGGgCGCc -3' miRNA: 3'- aGUUGUUC-CCG---CCC-CUUCGUCgGCGu -5' |
|||||||
6494 | 5' | -58.2 | NC_001847.1 | + | 35535 | 0.67 | 0.729784 |
Target: 5'- cUCGGCGAGGucGUGGcugccGAGGCGGCgCGCGa -3' miRNA: 3'- -AGUUGUUCC--CGCCc----CUUCGUCG-GCGU- -5' |
|||||||
6494 | 5' | -58.2 | NC_001847.1 | + | 3311 | 0.67 | 0.729784 |
Target: 5'- uUCAGguAcaGCGGGuAGGCGGCCGCGc -3' miRNA: 3'- -AGUUguUccCGCCCcUUCGUCGGCGU- -5' |
|||||||
6494 | 5' | -58.2 | NC_001847.1 | + | 69434 | 0.67 | 0.689708 |
Target: 5'- cUCAGCGcGGcGGUGGcGGAcGGCGGCgCGCGc -3' miRNA: 3'- -AGUUGU-UC-CCGCC-CCU-UCGUCG-GCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home